Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   AAYR26_RS18810 Genome accession   NZ_CP154901
Coordinates   3488986..3491082 (+) Length   698 a.a.
NCBI ID   WP_009328608.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2146     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 3483986..3496082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR26_RS18780 (AAYR26_18785) - 3484704..3484913 (-) 210 Protein_3570 helix-turn-helix domain-containing protein -
  AAYR26_RS18785 (AAYR26_18790) queF 3485121..3485618 (-) 498 WP_009328607.1 preQ(1) synthase -
  AAYR26_RS18790 (AAYR26_18795) queE 3485640..3486371 (-) 732 WP_003181103.1 7-carboxy-7-deazaguanine synthase QueE -
  AAYR26_RS18795 (AAYR26_18800) queD 3486364..3486804 (-) 441 WP_003181100.1 6-carboxytetrahydropterin synthase QueD -
  AAYR26_RS18800 (AAYR26_18805) queC 3486807..3487466 (-) 660 WP_003181098.1 7-cyano-7-deazaguanine synthase QueC -
  AAYR26_RS18805 (AAYR26_18810) - 3487731..3488765 (-) 1035 WP_003181096.1 hypothetical protein -
  AAYR26_RS18810 (AAYR26_18815) clpE 3488986..3491082 (+) 2097 WP_009328608.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  AAYR26_RS18815 (AAYR26_18820) motA 3491281..3492084 (+) 804 WP_003181093.1 flagellar motor stator protein MotA -
  AAYR26_RS18820 (AAYR26_18825) motB 3492077..3492856 (+) 780 WP_003181091.1 flagellar motor protein MotB -
  AAYR26_RS18825 (AAYR26_18830) - 3492881..3493336 (-) 456 WP_003181089.1 MarR family transcriptional regulator -
  AAYR26_RS18830 (AAYR26_18835) - 3493574..3495085 (+) 1512 WP_003181087.1 PAS domain-containing sensor histidine kinase -
  AAYR26_RS18835 (AAYR26_18840) - 3495147..3495389 (-) 243 WP_003181085.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAYR26_RS18840 (AAYR26_18845) - 3495605..3495937 (+) 333 WP_003181082.1 YkvA family protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78085.20 Da        Isoelectric Point: 5.6308

>NTDB_id=894868 AAYR26_RS18810 WP_009328608.1 3488986..3491082(+) (clpE) [Bacillus licheniformis strain FUA2146]
MRCQHCQKNEATIRLNMQINFTKKQMDLCEDCYKELTQPSMFSGNHFFGGGGSFFSQPSQAQTQTAAKKGLLDELAVNLT
NAAKTGLIDPVIGRDDEVARVIEILNRRNKNNPVLIGEPGVGKTAVAEGLALKIAEGDVPNKLKNKELYLLDVASLVANT
GIRGQFEERMKQLMKELKERKNAILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALER
RFQPIMVHEPTIEQAAAILNGLKEKYEAYHDVTYTDEAIKACVVLSSRYIQDRHLPDKAIDLLDEAGSKANLKIDTVSGE
QASQRLQEIEAEKAKALQEENYELAAKLRDEEEALHKKMESHEEEKRATVEAEDIQAIIEQKTGIPVGKLQHDDQKKMKE
LEAHLSSRVIGQKEAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKRLAEELFGTKDAIIRLDMSEYMEKH
AVSKLIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAG
VSEKRTTVGFNREEQVMGEQSMIDSLSGYFKPEFLNRFDSIIEFQPLEKEDLVKIAALLLKELEETLKEQNMTLEVSDEA
KEKIAEIGYHPAFGARPLRRTIQTAVEDQMTDLLLEEEHIKGFAVIVENDEIRVKTTR

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=894868 AAYR26_RS18810 WP_009328608.1 3488986..3491082(+) (clpE) [Bacillus licheniformis strain FUA2146]
ATGCGTTGTCAACATTGTCAAAAAAATGAGGCGACGATTCGCCTAAACATGCAAATCAACTTTACAAAAAAACAAATGGA
TTTATGTGAAGACTGCTATAAAGAGCTGACTCAGCCTTCTATGTTTTCAGGAAATCACTTTTTTGGCGGCGGAGGTTCTT
TCTTCAGCCAGCCATCACAAGCGCAGACGCAAACCGCTGCCAAAAAAGGCTTGCTCGATGAACTTGCCGTCAATTTAACA
AATGCAGCAAAGACCGGCTTGATCGATCCGGTGATCGGCCGCGATGATGAAGTAGCCCGTGTGATCGAGATCTTAAACCG
CAGAAATAAAAACAATCCGGTCTTAATCGGTGAACCGGGCGTCGGTAAAACAGCCGTCGCTGAAGGACTTGCTCTCAAAA
TCGCCGAAGGCGATGTTCCAAATAAATTGAAAAACAAAGAGCTCTACCTGCTTGATGTCGCTTCCCTCGTGGCAAACACC
GGCATCAGAGGGCAATTTGAAGAAAGAATGAAACAGCTGATGAAAGAGCTGAAAGAACGCAAAAACGCAATCTTGTTTAT
TGACGAAATTCACCTTCTTGTCGGGGCCGGCTCTGCAGAAGGCTCCATGGATGCGGGCAACATTTTAAAACCTGCACTTG
CCAGAGGCGAGCTGCAAGTTATCGGCGCTACGACGTTGAAGGAATATCGCCAAATTGAAAAAGATGCGGCGTTAGAGCGG
CGCTTCCAGCCGATCATGGTGCACGAACCGACAATTGAGCAGGCCGCAGCGATTTTAAACGGGCTCAAGGAAAAATACGA
AGCATATCACGATGTGACTTACACGGATGAAGCGATCAAAGCCTGCGTCGTTCTGTCAAGCCGCTATATTCAGGACCGCC
ATCTTCCCGATAAGGCGATCGACCTTTTGGATGAAGCCGGTTCAAAAGCGAACTTGAAAATCGACACGGTCAGCGGTGAA
CAAGCTTCCCAACGCCTGCAAGAAATCGAAGCGGAAAAAGCCAAAGCGCTTCAAGAAGAAAACTACGAGCTTGCAGCAAA
ACTCCGCGACGAAGAAGAAGCGCTGCATAAAAAAATGGAAAGCCATGAGGAAGAAAAACGGGCAACAGTTGAAGCGGAAG
ACATTCAAGCGATCATCGAACAAAAAACCGGCATTCCGGTCGGCAAGCTTCAGCACGACGATCAGAAGAAAATGAAAGAG
CTTGAAGCACACCTTTCAAGCCGCGTGATCGGTCAAAAAGAAGCGGTGAAAAAAGTGGCAAAAGCCGTCAGAAGAAGCCG
CGCCGGCCTGAAATCAAAAAACAGGCCTGTCGGTTCATTCCTGTTCGTCGGCCCGACAGGTGTCGGTAAAACAGAACTTT
CTAAAAGGCTTGCGGAAGAACTGTTCGGCACGAAGGATGCCATCATCCGCCTCGATATGAGCGAATACATGGAAAAACAC
GCCGTATCAAAGCTGATCGGTTCACCTCCTGGATATGTCGGCCACGAAGAAGCCGGACAGCTTACCGAAAAAGTCCGGAG
GAACCCGTACAGCATCGTTTTGCTCGATGAAATCGAAAAAGCCCATCCCGATGTCCAGCACATGTTCCTGCAAATCATGG
AAGACGGACGTCTGACAGACAGCCAAGGGCGGACGGTCAGCTTTAAAGATACCGTCATTATTATGACAAGCAATGCCGGT
GTATCTGAAAAGCGGACAACCGTCGGTTTTAACCGGGAAGAGCAAGTAATGGGCGAACAATCAATGATCGATTCATTAAG
CGGCTACTTTAAGCCGGAATTCCTGAACAGATTTGACAGCATCATCGAATTCCAGCCGCTCGAAAAAGAAGATCTGGTCA
AGATCGCCGCCCTCTTGCTGAAAGAGCTTGAAGAAACGTTAAAAGAGCAAAACATGACGCTCGAAGTTTCAGATGAGGCA
AAAGAAAAAATCGCTGAAATCGGATACCATCCGGCCTTTGGCGCCCGCCCATTAAGAAGAACCATTCAAACAGCGGTCGA
AGATCAAATGACCGATCTGCTGCTTGAAGAAGAACACATCAAAGGTTTTGCGGTTATCGTTGAAAACGATGAAATCCGGG
TGAAAACAACCAGATAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(435-601)

ATPase family associated with various cellular activities (AAA) (AAA)

(114-245)

AAA lid domain (AAA_lid_9)

(252-350)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(607-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

56.283

100

0.603
  clpE Streptococcus pneumoniae TIGR4

55.615

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.615

100

0.596
  clpE Streptococcus pneumoniae D39

55.615

100

0.596
  clpE Streptococcus pneumoniae R6

55.615

100

0.596
  clpC Lactococcus lactis subsp. cremoris KW2

55.586

100

0.585
  clpC Bacillus subtilis subsp. subtilis str. 168

53.916

95.129

0.513
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.68

89.542

0.427
  clpC Streptococcus thermophilus LMD-9

46.384

91.117

0.423
  clpC Streptococcus thermophilus LMG 18311

46.372

90.831

0.421
  clpC Streptococcus pneumoniae D39

47.03

89.255

0.42
  clpC Streptococcus pneumoniae TIGR4

47.03

89.255

0.42
  clpC Streptococcus pneumoniae Rx1

47.03

89.255

0.42
  clpC Streptococcus mutans UA159

46.916

88.252

0.414
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.669

86.963

0.371