Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   R3L04_RS02540 Genome accession   NZ_CP137075
Coordinates   517497..517970 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512497..522970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS02525 (R3L04_02530) pilX 515126..515944 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L04_RS02530 (R3L04_02535) pilW 515941..516942 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  R3L04_RS02535 (R3L04_02540) pilV 516943..517503 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  R3L04_RS02540 (R3L04_02545) fimU 517497..517970 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L04_RS02545 (R3L04_02550) ispH 518140..519090 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L04_RS02550 (R3L04_02555) gmk 519213..519842 (+) 630 WP_000015936.1 guanylate kinase -
  R3L04_RS02555 (R3L04_02560) rpoZ 519915..520193 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L04_RS02560 (R3L04_02565) - 520232..520362 (+) 131 Protein_485 hypothetical protein -
  R3L04_RS02565 (R3L04_02570) - 520402..522507 (+) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=894833 R3L04_RS02540 WP_001214068.1 517497..517970(-) (fimU) [Acinetobacter baumannii strain SNUBHAB0006]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=894833 R3L04_RS02540 WP_001214068.1 517497..517970(-) (fimU) [Acinetobacter baumannii strain SNUBHAB0006]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994