Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAVC70_RS06880 Genome accession   NZ_CP154898
Coordinates   1138946..1139578 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133946..1144578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS06860 (AAVC70_06860) - 1134975..1135160 (-) 186 WP_003151806.1 YvzF family protein -
  AAVC70_RS06865 (AAVC70_06865) - 1135277..1136719 (+) 1443 WP_014470998.1 spore germination protein -
  AAVC70_RS06870 (AAVC70_06870) - 1136694..1137794 (+) 1101 WP_013353561.1 spore germination protein -
  AAVC70_RS06875 (AAVC70_06875) - 1137791..1138903 (+) 1113 WP_013353562.1 Ger(x)C family spore germination protein -
  AAVC70_RS06880 (AAVC70_06880) vraR 1138946..1139578 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  AAVC70_RS06885 (AAVC70_06885) liaS 1139556..1140638 (-) 1083 WP_013353563.1 two-component system sensor histidine kinase LiaS -
  AAVC70_RS06890 (AAVC70_06890) liaF 1140635..1141366 (-) 732 WP_013353564.1 cell wall-active antibiotics response protein LiaF -
  AAVC70_RS06895 (AAVC70_06895) - 1141395..1142264 (-) 870 WP_013353565.1 DUF4097 domain-containing protein -
  AAVC70_RS06900 (AAVC70_06900) - 1142370..1143047 (-) 678 WP_013353566.1 PspA/IM30 family protein -
  AAVC70_RS06905 (AAVC70_06905) - 1143061..1143441 (-) 381 WP_013353567.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=894659 AAVC70_RS06880 WP_003151798.1 1138946..1139578(-) (vraR) [Bacillus amyloliquefaciens strain Fad 97]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=894659 AAVC70_RS06880 WP_003151798.1 1138946..1139578(-) (vraR) [Bacillus amyloliquefaciens strain Fad 97]
GTGATTCGAGTGTTACTGATTGATGATCACGAAATGGTCAGGATGGGCCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCGTCAGACGGACAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTCATTTTAATGG
ATCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGTGCGAAACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGGGCGCTCAGCTATTTGCTGAAAACATCTAA
AGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACACTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAACAAAGAAATTGGAGAAGAGCTGTTCATAACGATTAAAACGGTGAAAACCCACATCACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39