Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAVB98_RS13080 Genome accession   NZ_CP154895
Coordinates   2506009..2506641 (+) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2501009..2511641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS13055 (AAVB98_13055) - 2502146..2502526 (+) 381 WP_013353567.1 protein liaI -
  AAVB98_RS13060 (AAVB98_13060) - 2502540..2503217 (+) 678 WP_013353566.1 PspA/IM30 family protein -
  AAVB98_RS13065 (AAVB98_13065) - 2503323..2504192 (+) 870 WP_013353565.1 DUF4097 domain-containing protein -
  AAVB98_RS13070 (AAVB98_13070) liaF 2504221..2504952 (+) 732 WP_013353564.1 cell wall-active antibiotics response protein LiaF -
  AAVB98_RS13075 (AAVB98_13075) liaS 2504949..2506031 (+) 1083 WP_013353563.1 two-component system sensor histidine kinase LiaS -
  AAVB98_RS13080 (AAVB98_13080) vraR 2506009..2506641 (+) 633 WP_003151798.1 response regulator transcription factor Regulator
  AAVB98_RS13085 (AAVB98_13085) - 2506684..2507796 (-) 1113 WP_013353562.1 Ger(x)C family spore germination protein -
  AAVB98_RS13090 (AAVB98_13090) - 2507793..2508893 (-) 1101 WP_013353561.1 spore germination protein -
  AAVB98_RS13095 (AAVB98_13095) - 2508868..2510310 (-) 1443 WP_014470998.1 spore germination protein -
  AAVB98_RS13100 (AAVB98_13100) - 2510427..2510612 (+) 186 WP_003151806.1 YvzF family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=894566 AAVB98_RS13080 WP_003151798.1 2506009..2506641(+) (vraR) [Bacillus amyloliquefaciens strain Fad 77]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=894566 AAVB98_RS13080 WP_003151798.1 2506009..2506641(+) (vraR) [Bacillus amyloliquefaciens strain Fad 77]
GTGATTCGAGTGTTACTGATTGATGATCACGAAATGGTCAGGATGGGCCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCGTCAGACGGACAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTCATTTTAATGG
ATCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGTGCGAAACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGGGCGCTCAGCTATTTGCTGAAAACATCTAA
AGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACACTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAACAAAGAAATTGGAGAAGAGCTGTTCATAACGATTAAAACGGTGAAAACCCACATCACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39