Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R3L10_RS02505 Genome accession   NZ_CP137061
Coordinates   536450..537268 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SNUBHAB0274     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531450..542268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L10_RS02490 (R3L10_02495) pilE 531667..532092 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  R3L10_RS02495 (R3L10_02500) pilY2 532089..532571 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  R3L10_RS02500 (R3L10_02505) pilY1 532584..536438 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L10_RS02505 (R3L10_02510) pilX 536450..537268 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L10_RS02510 (R3L10_02515) pilW 537265..538266 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  R3L10_RS02515 (R3L10_02520) pilV 538267..538827 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  R3L10_RS02520 (R3L10_02525) fimU 538821..539294 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L10_RS02525 (R3L10_02530) ispH 539464..540414 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L10_RS02530 (R3L10_02535) gmk 540537..541166 (+) 630 WP_000015937.1 guanylate kinase -
  R3L10_RS02535 (R3L10_02540) rpoZ 541239..541517 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L10_RS02540 (R3L10_02545) - 541556..541685 (+) 130 Protein_481 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=894550 R3L10_RS02505 WP_000149374.1 536450..537268(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0274]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=894550 R3L10_RS02505 WP_000149374.1 536450..537268(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0274]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993