Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB98_RS11260 Genome accession   NZ_CP154895
Coordinates   2146023..2147153 (+) Length   376 a.a.
NCBI ID   WP_014471144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141023..2152153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS11235 (AAVB98_11235) - 2141982..2142671 (+) 690 WP_013353901.1 VWA domain-containing protein -
  AAVB98_RS11240 (AAVB98_11240) - 2142981..2143661 (+) 681 WP_014471147.1 VWA domain-containing protein -
  AAVB98_RS11245 (AAVB98_11245) - 2143747..2143911 (+) 165 WP_014471146.1 hypothetical protein -
  AAVB98_RS11250 (AAVB98_11250) fdhD 2144006..2144794 (+) 789 WP_013353899.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AAVB98_RS11255 (AAVB98_11255) moaA 2144812..2145837 (+) 1026 WP_014471145.1 GTP 3',8-cyclase MoaA -
  AAVB98_RS11260 (AAVB98_11260) rapC 2146023..2147153 (+) 1131 WP_014471144.1 tetratricopeptide repeat protein Regulator
  AAVB98_RS11265 (AAVB98_11265) - 2147275..2147754 (+) 480 WP_014471143.1 hypothetical protein -
  AAVB98_RS11270 (AAVB98_11270) - 2147828..2148016 (+) 189 WP_014472339.1 CsbD family protein -
  AAVB98_RS11275 (AAVB98_11275) ureA 2148368..2148685 (+) 318 WP_013353896.1 urease subunit gamma -
  AAVB98_RS11280 (AAVB98_11280) ureB 2148682..2149056 (+) 375 WP_013353895.1 urease subunit beta -
  AAVB98_RS11285 (AAVB98_11285) ureC 2149053..2150762 (+) 1710 WP_013353894.1 urease subunit alpha -
  AAVB98_RS11290 (AAVB98_11290) - 2150904..2151308 (+) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  AAVB98_RS11295 (AAVB98_11295) - 2151373..2152014 (+) 642 WP_013353893.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4460

>NTDB_id=894552 AAVB98_RS11260 WP_014471144.1 2146023..2147153(+) (rapC) [Bacillus amyloliquefaciens strain Fad 77]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYVKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=894552 AAVB98_RS11260 WP_014471144.1 2146023..2147153(+) (rapC) [Bacillus amyloliquefaciens strain Fad 77]
ATGACCGCATACGAGATTCCGTCATCTCAGGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTTACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACAGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTTAAGATGTCTGAAGTTTTTTATGTCATGAAACAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATATGTAAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTTATCTC
AGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGAGCATTTAGATGAAGCGCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGTCTGATTGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCACCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGATTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.431
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402