Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   R3L12_RS13880 Genome accession   NZ_CP137057
Coordinates   2963216..2964784 (-) Length   522 a.a.
NCBI ID   WP_048766006.1    Uniprot ID   A0A0M1I6U9
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958216..2969784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS13865 (R3L12_13845) gpmI 2959034..2960581 (+) 1548 WP_149930925.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  R3L12_RS13870 (R3L12_13850) - 2960593..2961768 (+) 1176 WP_149930924.1 S41 family peptidase -
  R3L12_RS13875 (R3L12_13855) pilR 2961770..2963188 (-) 1419 WP_149930923.1 sigma-54 dependent transcriptional regulator Regulator
  R3L12_RS13880 (R3L12_13860) pilS 2963216..2964784 (-) 1569 WP_048766006.1 PAS domain-containing sensor histidine kinase Regulator
  R3L12_RS13885 (R3L12_13865) - 2964807..2965442 (-) 636 WP_004932261.1 response regulator -
  R3L12_RS13890 (R3L12_13870) pbpG 2965656..2966714 (+) 1059 WP_149930922.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  R3L12_RS13895 (R3L12_13875) thrC 2966781..2967920 (-) 1140 WP_149930921.1 threonine synthase -
  R3L12_RS13900 (R3L12_13880) - 2967981..2969282 (-) 1302 WP_004932270.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58693.05 Da        Isoelectric Point: 6.7782

>NTDB_id=894485 R3L12_RS13880 WP_048766006.1 2963216..2964784(-) (pilS) [Acinetobacter soli strain SNUBHAB0075]
MPAPALSTQLSYTIYRLGAWYGAYRVIIGLSLILIFYTTGQGHSSDYLHPELYVFTLVIYTLLSFMQGGVFKFSTRWIAS
QLTLLFIVDIVVLSLLTYAVGSPSLHLSMLYVVTVFSAAILLQARMSLTVTLLAVIVVIYQQVVLVLFDKDHLSSISNSI
LLAFLFFVVYGIGQIAVRRFQLLENIANHQSDVLNQLQNINRYILDQAKEGYLVLDESYHVVVCNPAASSFLGIQPLFAH
EQLPLVNLQPDLVEVLRSTSLQDGETFNFESQFSTYRLHVRIQRLRVPQQSLILLILQDAQRMNQRVQQLKLAALGQLSA
SIAHEIRNPLAAIAQANELLSDSELHEQQQLQNMIRKQTKRINGIIEDTLGMARNQTTTPITIQLNPFLQSLLHEDLNDV
QQKLELQLPAHDVSIVFDPSQLRQVLVNLIRNALRHNAPDAPAVQIVVQLASTSIWIDIVDFGEGVTKRNLSQLFKPFFS
TEIQGTGLGLYLSQSLCEANHAKLTYVEQDKGACFRIHCPIN

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=894485 R3L12_RS13880 WP_048766006.1 2963216..2964784(-) (pilS) [Acinetobacter soli strain SNUBHAB0075]
ATGCCGGCGCCTGCTCTGTCTACCCAGCTGTCGTATACGATTTATCGTTTAGGCGCTTGGTATGGTGCCTATCGTGTCAT
TATTGGCTTAAGCCTGATTCTGATCTTTTACACCACAGGTCAGGGTCACAGCTCAGACTATTTACATCCCGAACTTTACG
TTTTTACACTGGTGATTTACACCTTGCTCAGCTTTATGCAAGGTGGAGTATTTAAATTCTCTACACGATGGATTGCCTCA
CAGCTCACCTTGCTGTTTATTGTCGACATTGTGGTACTGAGTTTACTCACCTACGCCGTGGGCAGCCCAAGTCTGCACTT
GAGCATGCTGTACGTGGTGACGGTATTTTCGGCGGCGATTTTGCTGCAAGCACGAATGTCACTGACCGTTACACTTCTCG
CGGTCATTGTGGTGATCTATCAGCAAGTGGTATTGGTTCTGTTTGACAAAGATCATCTCAGCTCGATCAGCAACAGTATT
TTGCTGGCTTTTTTATTTTTTGTGGTTTACGGAATCGGGCAAATCGCGGTGCGACGTTTTCAGTTACTTGAGAACATTGC
CAATCATCAATCTGACGTGCTCAATCAACTCCAAAATATCAATCGTTATATTCTAGATCAGGCCAAAGAGGGCTATCTGG
TACTCGACGAAAGTTATCATGTTGTGGTGTGTAATCCCGCAGCGTCGAGTTTTTTAGGCATACAGCCACTTTTTGCGCAT
GAACAATTGCCATTGGTGAATCTTCAGCCAGACTTAGTTGAAGTGCTCAGATCGACCTCGCTGCAAGATGGTGAAACATT
CAATTTTGAATCACAGTTTTCGACTTATCGTCTTCATGTGCGTATTCAGCGTTTACGGGTTCCGCAACAATCCTTAATCT
TGTTGATCTTGCAAGACGCTCAAAGAATGAATCAACGTGTTCAGCAGTTAAAACTTGCCGCATTGGGGCAACTCTCGGCC
AGTATTGCCCACGAAATTCGCAATCCTTTGGCTGCAATTGCCCAAGCCAATGAATTACTGTCTGATAGTGAACTGCATGA
GCAGCAGCAATTGCAGAACATGATCAGAAAACAAACCAAACGGATCAATGGCATTATTGAAGATACGCTCGGGATGGCGC
GTAATCAGACCACCACCCCAATCACCATCCAGCTCAATCCGTTTTTACAGAGTTTACTGCACGAAGACTTAAATGATGTA
CAGCAGAAATTAGAACTTCAGCTCCCAGCACATGATGTATCGATTGTGTTTGATCCATCTCAACTCCGGCAAGTGCTGGT
CAATCTGATTCGAAATGCACTTCGTCACAATGCACCAGATGCACCCGCAGTACAGATTGTGGTGCAGTTGGCATCGACTT
CGATCTGGATTGATATTGTCGATTTTGGTGAGGGCGTAACAAAACGTAATCTTTCGCAACTGTTTAAACCGTTTTTTAGT
ACCGAAATTCAGGGAACTGGTTTAGGATTGTATTTATCACAGAGTCTTTGCGAGGCCAATCATGCCAAGCTGACCTATGT
TGAACAAGATAAAGGGGCATGCTTTAGAATCCACTGCCCAATAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-377)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I6U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.465

98.851

0.598