Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   R3L12_RS13875 Genome accession   NZ_CP137057
Coordinates   2961770..2963188 (-) Length   472 a.a.
NCBI ID   WP_149930923.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2956770..2968188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS13860 (R3L12_13840) lptG 2957841..2958911 (+) 1071 WP_004932247.1 LPS export ABC transporter permease LptG -
  R3L12_RS13865 (R3L12_13845) gpmI 2959034..2960581 (+) 1548 WP_149930925.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  R3L12_RS13870 (R3L12_13850) - 2960593..2961768 (+) 1176 WP_149930924.1 S41 family peptidase -
  R3L12_RS13875 (R3L12_13855) pilR 2961770..2963188 (-) 1419 WP_149930923.1 sigma-54 dependent transcriptional regulator Regulator
  R3L12_RS13880 (R3L12_13860) pilS 2963216..2964784 (-) 1569 WP_048766006.1 PAS domain-containing sensor histidine kinase Regulator
  R3L12_RS13885 (R3L12_13865) - 2964807..2965442 (-) 636 WP_004932261.1 response regulator -
  R3L12_RS13890 (R3L12_13870) pbpG 2965656..2966714 (+) 1059 WP_149930922.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  R3L12_RS13895 (R3L12_13875) thrC 2966781..2967920 (-) 1140 WP_149930921.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53072.01 Da        Isoelectric Point: 6.3762

>NTDB_id=894484 R3L12_RS13875 WP_149930923.1 2961770..2963188(-) (pilR) [Acinetobacter soli strain SNUBHAB0075]
MTILQPRVLLIDDEEDLCSLMQISLSRMGIHTDCAYNVEQAKQLLATHEYNACLTDLNLPDGHGLDLIDHVNEHFPYIPI
AVITAYGNMEIAISALKAGAFDFVSKPINPQHLKQLIQTALNGSQMHPDNDRETLEHQLLIGQSEPIEALRIALRKISRS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPAELMESELFGHKKGSFTGATQDKQGLIQAAQGGSLFLDE
VAELPLSMQVKLLRAIQEKKIRPLGSEHEIDVDFRVISASHQQLEQLVQQGKFRQDLFFRIHVMDITLPPLRERGGDILI
LARHFIGHVCRDWIIPIKQLTAAAEEFLLHYPFPGNVRELRNMIERAITLSEAAFIDVQHLNGSSLRDYTSAVTEATDYL
KIPRVIAQQPETKTKLPHEGLEQYLEKIEKEILLNALNCSHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEES

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=894484 R3L12_RS13875 WP_149930923.1 2961770..2963188(-) (pilR) [Acinetobacter soli strain SNUBHAB0075]
ATGACCATTCTTCAACCACGTGTATTACTGATCGATGACGAAGAAGATCTTTGCTCATTGATGCAAATTAGCCTGTCGCG
CATGGGCATCCATACAGATTGTGCCTACAATGTAGAGCAGGCCAAACAATTGCTCGCGACACACGAATACAATGCCTGTC
TGACCGACCTCAATCTACCCGATGGTCATGGACTAGATTTGATTGATCATGTGAATGAACATTTTCCGTATATCCCGATT
GCTGTGATCACAGCCTATGGCAACATGGAAATTGCCATTTCAGCGCTTAAGGCGGGTGCTTTTGATTTTGTCAGTAAACC
GATCAATCCGCAGCATCTGAAACAACTGATACAGACCGCACTTAACGGCAGCCAGATGCATCCCGACAATGATAGGGAAA
CTCTTGAACACCAGCTCTTGATTGGACAATCTGAACCCATTGAAGCACTTCGGATTGCACTACGAAAAATCTCGCGCTCA
CAGGCGCCGGTCTTTATTACCGGTGAATCCGGAACAGGTAAAGAAGTGGTGGCCAATCTGGTTCATCGCTTAAGTAATCG
TAATGAAGGCCCTTTTATTGCGATTAACTGTGGTGCAATTCCAGCCGAACTGATGGAAAGTGAATTATTTGGGCATAAAA
AAGGCAGTTTTACCGGTGCCACACAAGACAAGCAAGGGTTGATACAAGCGGCTCAAGGCGGCAGTCTGTTTCTCGATGAA
GTGGCAGAATTACCGCTGAGCATGCAGGTCAAATTGTTACGCGCTATTCAGGAAAAGAAAATTCGCCCCCTCGGATCTGA
GCACGAAATCGATGTGGATTTTCGAGTGATCAGTGCCAGTCATCAACAGCTTGAACAACTGGTTCAACAGGGCAAATTTC
GCCAAGATTTGTTTTTTCGTATTCATGTCATGGACATTACCCTGCCACCGCTGCGAGAGCGTGGAGGCGATATTTTGATT
TTAGCACGACATTTTATTGGGCATGTCTGTCGTGACTGGATCATCCCGATCAAGCAACTGACCGCAGCAGCTGAAGAATT
TTTACTGCATTATCCGTTTCCGGGGAATGTACGTGAATTACGCAACATGATCGAACGTGCCATAACTTTAAGTGAAGCTG
CATTTATCGACGTGCAACACTTAAATGGCTCTTCTTTACGCGACTATACTTCCGCAGTAACTGAAGCAACCGATTATCTT
AAAATTCCACGTGTAATCGCACAGCAGCCTGAAACTAAAACCAAGCTTCCTCACGAAGGACTCGAGCAATATCTTGAAAA
AATTGAAAAAGAGATATTATTAAATGCTTTGAATTGTAGTCACTGGAACCGAACCTTGGCCGCAAAAAAACTCGGCATGA
GCTTTCGCTCACTTCGCTATCGCTTGAAGAAATTTGGTCTTGATACTGAAGAAAGTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.961

98.729

0.72
  pilR Pseudomonas aeruginosa PAK

49.567

97.881

0.485