Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R3L12_RS10730 Genome accession   NZ_CP137057
Coordinates   2259750..2260406 (+) Length   218 a.a.
NCBI ID   WP_048763050.1    Uniprot ID   A0A0M1I800
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254750..2265406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS10715 (R3L12_10695) - 2255760..2256776 (-) 1017 WP_149930006.1 putative solute-binding protein -
  R3L12_RS10720 (R3L12_10700) - 2256867..2257694 (-) 828 WP_149930007.1 NAD(P)H-binding protein -
  R3L12_RS10725 (R3L12_10705) recG 2257718..2259763 (+) 2046 WP_149930008.1 ATP-dependent DNA helicase RecG -
  R3L12_RS10730 (R3L12_10710) comF 2259750..2260406 (+) 657 WP_048763050.1 ComF family protein Machinery gene
  R3L12_RS10735 (R3L12_10715) - 2260358..2260804 (-) 447 WP_149930009.1 NUDIX domain-containing protein -
  R3L12_RS10740 (R3L12_10720) - 2260801..2261385 (-) 585 WP_025095676.1 TIGR00730 family Rossman fold protein -
  R3L12_RS10745 (R3L12_10725) - 2261543..2262556 (+) 1014 WP_004934494.1 CorA family divalent cation transporter -
  R3L12_RS10750 (R3L12_10730) - 2262602..2262889 (-) 288 WP_004945157.1 lipid asymmetry maintenance protein MlaB -
  R3L12_RS10755 (R3L12_10735) - 2262902..2263534 (-) 633 WP_004934488.1 phospholipid-binding protein MlaC -
  R3L12_RS10760 (R3L12_10740) - 2263553..2264221 (-) 669 WP_004934486.1 outer membrane lipid asymmetry maintenance protein MlaD -
  R3L12_RS10765 (R3L12_10745) mlaE 2264221..2264997 (-) 777 WP_004934483.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24989.13 Da        Isoelectric Point: 8.8756

>NTDB_id=894465 R3L12_RS10730 WP_048763050.1 2259750..2260406(+) (comF) [Acinetobacter soli strain SNUBHAB0075]
MPMFKAVYHSLHTLWQHTRHCPLCGHSAAHSPYVICTDCWQDLPWLNDSVLRHELNIQAACEYADPINQIVQQFKYHEKL
HHQRLLTQLILQLPLPRVQAIVPMPISTARLCERGYNQAMLIAEGVAKQLNLPIWQPVLRRAEHTQKGLSRLERIAGIEQ
QFVPDLRVRTRFRRVMIIDDVVTTGSSIYALSQALTTLGCQRIYPICVAAASVSREAR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=894465 R3L12_RS10730 WP_048763050.1 2259750..2260406(+) (comF) [Acinetobacter soli strain SNUBHAB0075]
ATGCCTATGTTTAAGGCAGTGTATCATTCATTACACACGCTCTGGCAGCACACGCGACATTGTCCGCTGTGCGGTCATTC
TGCCGCACACAGTCCATACGTCATTTGCACAGATTGCTGGCAAGATCTGCCGTGGCTCAATGATTCGGTGCTGCGCCATG
AATTGAACATTCAGGCGGCATGTGAATATGCCGACCCGATCAATCAGATTGTGCAGCAATTTAAATACCATGAAAAACTG
CATCATCAGCGCTTACTCACGCAACTGATTTTGCAACTTCCCTTACCGCGGGTTCAGGCCATTGTGCCAATGCCGATTTC
GACAGCGCGGCTTTGTGAACGTGGTTATAATCAAGCAATGCTGATTGCTGAAGGTGTCGCCAAACAGCTTAACCTTCCCA
TATGGCAACCCGTGCTGCGTCGGGCTGAACACACACAAAAGGGCTTAAGCCGATTAGAGCGCATTGCGGGTATTGAGCAG
CAATTCGTACCCGATTTGCGTGTGCGCACTCGCTTTCGGCGGGTCATGATTATCGATGATGTAGTCACGACAGGCAGCTC
AATTTACGCCTTGTCTCAAGCACTCACCACATTAGGATGCCAACGCATTTATCCGATCTGTGTCGCTGCGGCCTCTGTTT
CACGTGAAGCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I800

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.286

96.33

0.523
  comF Acinetobacter baumannii D1279779

54.286

96.33

0.523