Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   R3L12_RS09075 Genome accession   NZ_CP137057
Coordinates   1919071..1923360 (-) Length   1429 a.a.
NCBI ID   WP_149930104.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 1914071..1928360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS09015 (R3L12_08995) - 1914157..1914621 (-) 465 WP_004935204.1 DUF2750 domain-containing protein -
  R3L12_RS09050 (R3L12_09030) elsL 1915581..1916090 (-) 510 WP_076032950.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  R3L12_RS09055 (R3L12_09035) - 1916077..1916490 (-) 414 WP_076032951.1 YbaN family protein -
  R3L12_RS09060 (R3L12_09040) - 1916632..1917501 (+) 870 WP_149930102.1 DUF1853 family protein -
  R3L12_RS09065 (R3L12_09045) - 1917633..1917776 (+) 144 WP_088459345.1 entericidin A/B family lipoprotein -
  R3L12_RS09070 (R3L12_09050) dapE 1917895..1919028 (+) 1134 WP_149930103.1 succinyl-diaminopimelate desuccinylase -
  R3L12_RS09075 (R3L12_09055) chpA 1919071..1923360 (-) 4290 WP_149930104.1 Hpt domain-containing protein Regulator
  R3L12_RS09080 (R3L12_09060) - 1923428..1924882 (-) 1455 WP_149930105.1 methyl-accepting chemotaxis protein -
  R3L12_RS09085 (R3L12_09065) - 1924925..1925455 (-) 531 WP_004935181.1 chemotaxis protein CheW -
  R3L12_RS09090 (R3L12_09070) - 1925457..1925828 (-) 372 WP_004935180.1 response regulator -
  R3L12_RS09095 (R3L12_09075) pilG 1925855..1926238 (-) 384 WP_149930106.1 twitching motility response regulator PilG Regulator
  R3L12_RS09100 (R3L12_09080) - 1926479..1927120 (+) 642 WP_149930107.1 hypothetical protein -
  R3L12_RS09105 (R3L12_09085) - 1927179..1928285 (+) 1107 WP_119025374.1 efflux RND transporter periplasmic adaptor subunit -

Sequence


Protein


Download         Length: 1429 a.a.        Molecular weight: 162500.68 Da        Isoelectric Point: 4.6202

>NTDB_id=894460 R3L12_RS09075 WP_149930104.1 1919071..1923360(-) (chpA) [Acinetobacter soli strain SNUBHAB0075]
MDTALNTRLAALTLPEDQYLDQDQEILDVFIEELEEVFSALEHLIQAWHTTPDDQALLQEICRHFNNLKGTGRMVGANAS
SEIAWMVEETLTRILNSILPTTLPIQQYVAQVYRLYRDELIEDFKQRQPHRVDLRPYAFIGSQLQLNLEIEPALMTLLMR
ASQTADELELAPTNSVKLSESIVIFLEEISVYVADIHHFLANSAPSDDDFNRLLRALHTIRGSSSMACIDAIFDASTALE
STIKQRLLQHGALLSTEQALLGQYLEFITQAVHNIQHGLEAKMLQPLLNIFLDQYQLYQHQLESTAAHELQLNGGVVAAL
LALEIDDLLDAEFEFQDRIRHQSVDYIVILQEQAASLYAATDTDRTRVLHIFTQHLQSVYQELIGITSSDFPQSLYDAFQ
PVHTAFVGLFDSLAAAQHISSFTPYQVLFDQLNREIKPFKPLDLEEFASQSVTTQHSDISTDSVLNLDMRLMSYLAEDRQ
LVLAQPLQVDDSLLEIFLEESEELLAGVETELTLWAEAPHNLDILQHLIRFLHTLKGGANMVQLNQIGLIAHELESIYQR
LIYQQLDVSLELIKIIRIVHDDLAERIQNLYQHAVEFPVSHVLDVLQHIEDWLPAAFAEADFTQNQVIEQAGLKLDDQMS
LGEVLAFNSVPAASETFPQTLVEKMFVDEAQDLLSQAELNLQQWIKERHQRHLLLELQRIFHRLTRSARLLELKYVMDIT
TRLEITFERMNLHNSKTSSYDPLLLNTVQWLRLAIFDTRYDHYHELKHQLEQLELTQPLFPVQFEQIAASLSESGAVSPG
DGTEPPSMHGEWDTSIAVDESNEMIRVSADLIDKMIDQSGENAINRSRIQMDIAQVDTVLGEMELAIQRLSRQLKYLDRV
LDTQSLQQLSGEHTATLEPEQYSNFYHLSKSLAESASDLLDFRTSLTEKIRDTESLLLQQSRIQADLQENLIRTRLVPFS
HLLPRLQRTVRQTALALNRPTQLLVHNTEGELDRSILERLVVPLEHMLRNAIDHGIEDQQTRLSQGKPSIGTIELSIRRH
GTDVVLQLKDDGRGMDSNAIANKAQQLGYLDHFHTLDDDQIFQYIFYSGFSTASAITHISGRGVGLDIVHNEIKALGGKI
TVTAQAGMGTTFSLRVPTTVAVSDALMVKVLDQQYALPLGKIERIVRLSPLILEQYFNSQQDRFELDNTRYKLRYLGEFV
SNVVEPDWSTITGELEVLLIHSSTGPQVALLVDQVVGSRGQIVVKPIGQQFSQVKVVAGASILGDGQVCLILDPITIAEQ
VDQQPRQYRHDTDHERAVREERAMIMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEKLEHIRPDVILLDVEMPRMD
GFEFTRRLRQYNLLQALPIIMISSRTGEKYREMAQQLEVNDYLGKPFQEEQLLAKIQMLLMQATRQTVL

Nucleotide


Download         Length: 4290 bp        

>NTDB_id=894460 R3L12_RS09075 WP_149930104.1 1919071..1923360(-) (chpA) [Acinetobacter soli strain SNUBHAB0075]
ATGGACACCGCATTAAATACGCGTCTGGCGGCGCTGACCTTGCCTGAAGATCAATATCTGGATCAGGATCAGGAGATTCT
TGACGTTTTTATTGAAGAGCTCGAAGAGGTGTTTAGTGCACTGGAGCACCTGATTCAGGCTTGGCATACGACGCCTGACG
ATCAAGCCTTGTTGCAAGAAATCTGTCGGCACTTTAATAATTTAAAAGGTACGGGCCGGATGGTGGGGGCCAATGCGTCG
AGTGAAATTGCATGGATGGTGGAGGAAACCCTGACACGAATTCTCAACTCAATTTTACCTACTACACTTCCGATTCAGCA
GTATGTGGCTCAGGTTTATCGGCTTTATCGAGATGAACTGATTGAGGATTTTAAACAACGCCAGCCACATCGTGTCGATT
TACGGCCCTATGCATTTATTGGGTCACAGTTACAACTCAATCTCGAGATCGAACCTGCGCTGATGACTCTGCTCATGAGA
GCATCTCAGACAGCTGATGAATTGGAACTCGCGCCAACTAACAGCGTCAAACTAAGTGAATCTATTGTCATTTTTCTAGA
AGAAATCTCGGTTTATGTTGCAGATATCCATCATTTTTTAGCAAACTCAGCCCCTTCGGATGATGACTTTAACCGACTGT
TACGTGCCTTGCATACCATTCGTGGTAGCTCATCCATGGCCTGTATCGATGCGATTTTTGATGCCAGTACAGCACTTGAA
AGCACAATCAAGCAGAGATTACTCCAGCATGGAGCACTACTCTCTACCGAGCAGGCTTTGCTTGGTCAGTATCTGGAATT
TATTACACAGGCGGTGCACAACATTCAGCATGGCTTAGAGGCCAAGATGCTTCAACCACTACTGAATATCTTTTTAGATC
AGTATCAGCTTTATCAGCATCAGCTCGAATCGACTGCTGCACATGAGTTACAGCTTAATGGCGGTGTGGTAGCGGCCTTA
CTCGCACTTGAAATTGATGATTTGCTCGATGCCGAATTTGAGTTTCAAGATCGTATACGGCACCAGTCGGTCGATTATAT
TGTGATTTTACAGGAACAGGCCGCAAGCCTATACGCTGCGACCGATACAGACCGAACACGTGTTTTGCATATTTTTACCC
AGCATTTGCAATCGGTTTATCAAGAACTCATCGGAATCACGAGTAGTGATTTTCCTCAAAGCCTATATGATGCATTCCAG
CCAGTGCATACCGCATTTGTGGGGCTGTTTGATAGTTTGGCTGCGGCACAGCACATTAGTTCTTTTACACCGTATCAGGT
GCTGTTTGATCAGCTCAATCGAGAAATCAAGCCATTTAAACCGCTTGATTTGGAAGAATTTGCTTCTCAAAGTGTAACGA
CTCAACATAGTGACATCAGTACCGATTCGGTACTTAATCTCGACATGCGACTGATGTCTTATTTGGCAGAAGATCGTCAG
CTTGTGCTGGCACAGCCGTTACAGGTCGATGACAGTTTGCTGGAAATTTTCCTTGAAGAGAGTGAAGAACTACTGGCAGG
CGTCGAAACCGAGCTGACGCTCTGGGCCGAAGCGCCACATAATTTAGATATCTTGCAACATCTGATCCGGTTTTTGCACA
CCTTAAAAGGGGGTGCCAATATGGTTCAGCTAAATCAGATCGGTTTGATTGCACATGAGCTGGAATCGATTTATCAACGT
CTGATCTATCAGCAATTAGATGTTTCATTAGAACTGATCAAGATCATCCGAATTGTGCATGATGATCTGGCCGAACGGAT
TCAAAACCTGTATCAGCATGCAGTAGAGTTTCCTGTGAGTCATGTCTTGGATGTGCTTCAACATATCGAAGACTGGTTGC
CGGCCGCATTCGCTGAAGCGGATTTTACTCAAAACCAAGTAATCGAGCAGGCTGGGTTAAAGCTTGACGATCAGATGAGC
TTGGGTGAAGTACTGGCGTTCAATTCAGTACCCGCCGCCTCTGAGACTTTTCCGCAGACCTTGGTCGAAAAAATGTTTGT
GGATGAAGCACAAGATTTACTTTCACAGGCCGAACTCAATCTTCAGCAATGGATCAAGGAGCGTCATCAGCGTCATTTGC
TGTTGGAGCTACAACGTATTTTTCATCGCTTAACGCGCAGTGCGCGGCTGCTCGAACTCAAATATGTCATGGACATTACC
ACGCGACTTGAGATTACCTTTGAGCGGATGAATCTGCACAATTCTAAAACGAGCAGCTACGATCCATTACTTCTCAACAC
CGTACAGTGGTTGAGACTGGCAATTTTTGATACGCGTTACGATCATTATCACGAACTTAAGCATCAACTTGAGCAGTTAG
AGCTGACCCAACCTTTGTTTCCGGTACAGTTTGAACAGATTGCCGCATCATTGTCCGAATCGGGTGCGGTTAGTCCGGGT
GACGGCACAGAGCCGCCGTCTATGCATGGTGAGTGGGACACTTCCATTGCGGTTGATGAAAGCAATGAAATGATCCGTGT
TTCGGCAGATCTGATTGACAAAATGATTGATCAGTCTGGTGAAAACGCCATCAATCGCTCCCGAATTCAGATGGATATTG
CGCAGGTCGATACCGTTTTGGGTGAAATGGAACTGGCGATTCAGCGTTTATCGCGTCAGCTTAAATATCTAGATCGGGTG
TTAGATACACAATCCTTACAGCAGCTTTCTGGTGAACATACCGCTACGCTTGAGCCAGAGCAATATTCAAATTTTTATCA
TTTAAGTAAATCCTTGGCAGAATCGGCATCGGATTTACTCGATTTTCGTACCAGTTTGACCGAAAAAATTCGAGATACCG
AAAGTTTACTGCTCCAGCAATCGCGAATTCAGGCCGATCTGCAAGAAAATCTGATTCGTACTCGACTGGTTCCGTTTTCG
CATCTTTTACCACGCTTACAACGCACCGTCCGACAAACTGCTCTGGCGCTGAATCGACCAACTCAACTGCTGGTTCACAA
TACAGAAGGCGAGTTAGATCGGAGTATTCTAGAGCGTTTGGTCGTACCGCTCGAACATATGCTCCGCAATGCCATCGATC
ATGGTATTGAAGATCAGCAAACACGACTGAGCCAAGGTAAACCATCAATCGGGACCATTGAGCTTTCTATCCGCCGTCAT
GGTACTGATGTGGTCTTGCAGTTAAAAGATGATGGTCGAGGCATGGACAGCAATGCAATTGCAAACAAGGCGCAGCAACT
GGGCTATTTAGACCATTTTCATACTTTAGATGACGATCAAATCTTCCAGTATATCTTTTACTCGGGGTTTTCAACGGCGT
CTGCAATTACCCATATTTCGGGGCGTGGTGTAGGCCTCGATATTGTACATAACGAAATCAAGGCGCTCGGAGGTAAAATC
ACAGTGACTGCCCAAGCGGGTATGGGAACCACATTTAGCTTGCGTGTGCCCACCACAGTAGCGGTCAGTGATGCGCTGAT
GGTCAAGGTGCTTGATCAGCAATATGCCTTACCACTGGGTAAAATTGAGCGTATTGTGCGCTTATCGCCGCTGATTTTGG
AACAATACTTTAATAGCCAGCAAGATCGTTTTGAGCTTGATAATACCCGCTACAAATTACGTTATCTGGGTGAATTTGTA
AGTAATGTGGTCGAGCCAGACTGGTCAACCATCACAGGTGAGCTGGAGGTGTTGCTGATTCATTCCAGCACAGGGCCGCA
GGTGGCGTTGCTGGTTGATCAGGTGGTCGGATCACGTGGTCAGATTGTGGTGAAACCAATCGGGCAACAGTTTAGTCAGG
TTAAAGTGGTGGCGGGCGCATCGATTTTAGGCGATGGGCAAGTCTGTTTGATCTTAGATCCAATTACCATTGCAGAACAA
GTCGATCAGCAGCCACGACAATATCGCCACGATACCGACCACGAGCGCGCTGTGCGTGAAGAGCGAGCCATGATCATGGT
AGTGGATGATTCAGTAACGGTTCGAAAGGTCACATCACGTTTACTCGAACGCCAAGGGTACGATGTAGTAACAGCCAAAG
ATGGCCAAGATGCGCTAGAGAAGCTAGAGCACATTCGTCCAGATGTCATTTTACTCGACGTTGAGATGCCGCGAATGGAT
GGGTTCGAATTTACTCGCCGTTTACGTCAGTACAATTTACTGCAAGCTTTACCGATTATCATGATCAGCTCACGTACGGG
CGAAAAATACCGCGAGATGGCACAGCAGCTTGAGGTGAACGATTATCTGGGCAAACCTTTTCAAGAGGAACAACTGCTTG
CCAAAATTCAGATGCTGCTCATGCAAGCAACTAGGCAAACCGTTTTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

45.712

100

0.485