Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAVD18_RS16815 Genome accession   NZ_CP154893
Coordinates   3205503..3205793 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200503..3210793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS16775 (AAVD18_16775) darA 3200520..3200849 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  AAVD18_RS16780 (AAVD18_16780) - 3200862..3201302 (+) 441 WP_013350745.1 DUF327 family protein -
  AAVD18_RS16785 (AAVD18_16785) holB 3201314..3202303 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  AAVD18_RS16790 (AAVD18_16790) yaaT 3202306..3203133 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT Regulator
  AAVD18_RS16795 (AAVD18_16795) yabA 3203148..3203507 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  AAVD18_RS16800 (AAVD18_16800) - 3203568..3204311 (+) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAVD18_RS16805 (AAVD18_16805) - 3204298..3204597 (+) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  AAVD18_RS16810 (AAVD18_16810) rsmI 3204572..3205453 (+) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAVD18_RS16815 (AAVD18_16815) abrB 3205503..3205793 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AAVD18_RS16820 (AAVD18_16820) metG 3206276..3208267 (+) 1992 WP_013350752.1 methionine--tRNA ligase -
  AAVD18_RS16825 (AAVD18_16825) - 3208344..3209111 (+) 768 WP_014469598.1 TatD family hydrolase -
  AAVD18_RS16830 (AAVD18_16830) - 3209246..3210565 (+) 1320 WP_014471348.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=894451 AAVD18_RS16815 WP_169510469.1 3205503..3205793(-) (abrB) [Bacillus amyloliquefaciens strain Fad 11/2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=894451 AAVD18_RS16815 WP_169510469.1 3205503..3205793(-) (abrB) [Bacillus amyloliquefaciens strain Fad 11/2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979