Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAVD18_RS16060 Genome accession   NZ_CP154893
Coordinates   3074224..3075018 (-) Length   264 a.a.
NCBI ID   WP_013354215.1    Uniprot ID   A0A9P1JLP7
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069224..3080018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS16040 (AAVD18_16040) - 3069345..3070763 (-) 1419 WP_014471292.1 HAMP domain-containing sensor histidine kinase -
  AAVD18_RS16045 (AAVD18_16045) - 3070760..3071443 (-) 684 WP_013354212.1 response regulator transcription factor -
  AAVD18_RS16050 (AAVD18_16050) - 3071657..3072568 (+) 912 WP_013354213.1 PepSY domain-containing protein -
  AAVD18_RS16055 (AAVD18_16055) htrA 3072941..3074137 (-) 1197 WP_013354214.1 S1C family serine protease Regulator
  AAVD18_RS16060 (AAVD18_16060) vicX 3074224..3075018 (-) 795 WP_013354215.1 MBL fold metallo-hydrolase Regulator
  AAVD18_RS16065 (AAVD18_16065) yycI 3075034..3075873 (-) 840 WP_014472401.1 two-component system regulatory protein YycI -
  AAVD18_RS16070 (AAVD18_16070) yycH 3075860..3077218 (-) 1359 WP_013354217.1 two-component system activity regulator YycH -
  AAVD18_RS16075 (AAVD18_16075) walK 3077208..3079043 (-) 1836 WP_013354218.1 cell wall metabolism sensor histidine kinase WalK -
  AAVD18_RS16080 (AAVD18_16080) walR 3079050..3079757 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.16 Da        Isoelectric Point: 5.7992

>NTDB_id=894444 AAVD18_RS16060 WP_013354215.1 3074224..3075018(-) (vicX) [Bacillus amyloliquefaciens strain Fad 11/2]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=894444 AAVD18_RS16060 WP_013354215.1 3074224..3075018(-) (vicX) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGTTATGTGAGCGACAGAATGAAGGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCACGCA
TCTACTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCAAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCTCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527