Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R3L13_RS08440 Genome accession   NZ_CP137055
Coordinates   1755328..1755963 (+) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1750328..1760963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS08425 (R3L13_08445) adeT2 1751388..1752374 (-) 987 WP_004742186.1 putative multidrug efflux protein AdeT2 -
  R3L13_RS08430 (R3L13_08450) - 1752454..1753269 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  R3L13_RS08435 (R3L13_08455) recG 1753290..1755335 (+) 2046 WP_004742183.1 ATP-dependent DNA helicase RecG -
  R3L13_RS08440 (R3L13_08460) comF 1755328..1755963 (+) 636 WP_002125534.1 ComF family protein Machinery gene
  R3L13_RS08445 (R3L13_08465) - 1755966..1756367 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  R3L13_RS08450 (R3L13_08470) - 1756382..1756963 (-) 582 WP_032033872.1 TIGR00730 family Rossman fold protein -
  R3L13_RS08455 (R3L13_08475) - 1757121..1758134 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  R3L13_RS08460 (R3L13_08480) - 1758204..1758491 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  R3L13_RS08465 (R3L13_08485) - 1758503..1759144 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  R3L13_RS08470 (R3L13_08490) - 1759171..1759851 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  R3L13_RS08475 (R3L13_08495) mlaE 1759851..1760627 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=894411 R3L13_RS08440 WP_002125534.1 1755328..1755963(+) (comF) [Acinetobacter baumannii strain SNUBHAB0137]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=894411 R3L13_RS08440 WP_002125534.1 1755328..1755963(+) (comF) [Acinetobacter baumannii strain SNUBHAB0137]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986