Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AAVD18_RS10115 Genome accession   NZ_CP154893
Coordinates   1909757..1911529 (-) Length   590 a.a.
NCBI ID   WP_013353103.1    Uniprot ID   A0A9P1NIU0
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904757..1916529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS10095 (AAVD18_10095) sdhA 1904969..1906729 (-) 1761 WP_013353100.1 succinate dehydrogenase flavoprotein subunit -
  AAVD18_RS10100 (AAVD18_10100) sdhC 1906763..1907371 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  AAVD18_RS10105 (AAVD18_10105) - 1907668..1908114 (+) 447 WP_013353101.1 YslB family protein -
  AAVD18_RS10110 (AAVD18_10110) - 1908161..1909390 (-) 1230 WP_013353102.1 aspartate kinase -
  AAVD18_RS10115 (AAVD18_10115) uvrC 1909757..1911529 (-) 1773 WP_013353103.1 excinuclease ABC subunit UvrC Machinery gene
  AAVD18_RS10120 (AAVD18_10120) trxA 1911675..1911989 (-) 315 WP_003152560.1 thioredoxin -
  AAVD18_RS10125 (AAVD18_10125) - 1912141..1913631 (-) 1491 WP_013353104.1 alpha-N-arabinofuranosidase -
  AAVD18_RS10130 (AAVD18_10130) - 1913845..1914822 (-) 978 WP_014470796.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  AAVD18_RS10135 (AAVD18_10135) - 1914854..1915627 (-) 774 WP_013353106.1 electron transfer flavoprotein subunit beta/FixA family protein -
  AAVD18_RS10140 (AAVD18_10140) - 1915641..1916420 (-) 780 WP_013353107.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68440.31 Da        Isoelectric Point: 9.5501

>NTDB_id=894408 AAVD18_RS10115 WP_013353103.1 1909757..1911529(-) (uvrC) [Bacillus amyloliquefaciens strain Fad 11/2]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVEDITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYSRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPMFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQMLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=894408 AAVD18_RS10115 WP_013353103.1 1909757..1911529(-) (uvrC) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAGGTGCTGAAAAACAGGGTGCGATCCTATTTCACCGGTTCTCACGACGCAAAAACCC
AAAGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACCTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGACAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTTATTGTCACCCGGAATGTCAAAAAAGACAAAGGGCGCTATTTCGGCCCGTACCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTATACCCGCTCAGGAAGTGCTCGAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCTCCTTGTGTTAAAGATATTTCTGAGGAGACAAATCGCGAGCTGGTTGAAGATAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAGGTCAAAAAAGAGCTTGAAGAGAAAATGACAGAGGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGATCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTTTGGATCGCGATGTGTTTGCTTATGCCTACGATAAAGGCTGGATGTGCGTCCAGGTCTTTTTCATACGCCAGGG
AAAGCTGATTGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTACATCGGCCAGT
TCTATTCTAAAAACAATCACTTTCTGCCTAAAGAAATTCTGGTGCCTGACAGCGTGGACAGGGACATGATCAGCGAGCTT
TTGGAAACCGCCGTGCATCAGCCGAAAAAGGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCATTAATCGAACGGGATGAGGAACGGTCAATCGGTGCTGCCGAACGGCTCGGTGAGGCGCTGA
ACATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCTGTGTCGGCCATGATTGTC
TTTATTGACGGTAAGCCCAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGATGATTACGGCTC
TATGAGGGAAGTCGTCAGAAGAAGATATTCGAGGGTGCTCCGCGAAAATCTCCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGACAGATTAATGCGGCGCGCGACGTGCTCGAAAATGAGCTCGGCCTTGATGTCCCTGTAGCGGGATTGGCG
AAGGATGATAAACACCGAACATCCAACCTTTTGATCGGCGATCCGCTTGAACCGATGTTTCTGGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGCTTTGCGATCAGTTTTCACAGGCAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTTTGGATGATATCCCGGGCATCGGCGAAAAACGCAAAAAAATGCTCTTAAAGCATTTCGGATCCGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATTAAAAAAGCCGGTGTGCCGGCTGCGGCGGCTCAGATGCTGTTTGAAAA
ATTGAAAAAATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(197-229)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NIU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae R6

59.014

99.661

0.588
  uvrC Streptococcus pneumoniae D39

59.014

99.661

0.588