Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   R3Y73_RS15500 Genome accession   NZ_CP137015
Coordinates   3096653..3097231 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain CYS06     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3091653..3102231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS19370 - 3092153..3092668 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  R3Y73_RS19375 - 3092912..3093652 (-) 741 Protein_2985 protoglobin domain-containing protein -
  R3Y73_RS15485 (R3Y73_15485) - 3093568..3095091 (-) 1524 WP_077722022.1 FAD-dependent oxidoreductase -
  R3Y73_RS15490 (R3Y73_15490) - 3095216..3096073 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  R3Y73_RS15495 (R3Y73_15495) - 3096104..3096337 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  R3Y73_RS15500 (R3Y73_15500) comK 3096653..3097231 (+) 579 WP_003155179.1 competence protein ComK Regulator
  R3Y73_RS15505 (R3Y73_15505) - 3097377..3097745 (+) 369 WP_003155175.1 iron chaperone -
  R3Y73_RS15510 (R3Y73_15510) - 3097772..3098143 (+) 372 WP_077722024.1 iron chaperone -
  R3Y73_RS15515 (R3Y73_15515) - 3098276..3098986 (-) 711 WP_003155170.1 YrpD family protein -
  R3Y73_RS15520 (R3Y73_15520) - 3099182..3099451 (+) 270 WP_176283232.1 excalibur calcium-binding domain-containing protein -
  R3Y73_RS15525 (R3Y73_15525) - 3099484..3099801 (-) 318 WP_176283233.1 YbjQ family protein -
  R3Y73_RS15530 (R3Y73_15530) - 3099842..3101311 (-) 1470 WP_063174181.1 sodium:solute symporter -
  R3Y73_RS15535 (R3Y73_15535) - 3101308..3101508 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  R3Y73_RS15540 (R3Y73_15540) - 3101629..3101988 (-) 360 WP_012117241.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=894367 R3Y73_RS15500 WP_003155179.1 3096653..3097231(+) (comK) [Bacillus velezensis strain CYS06]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=894367 R3Y73_RS15500 WP_003155179.1 3096653..3097231(+) (comK) [Bacillus velezensis strain CYS06]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823