Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   AAVD18_RS04260 Genome accession   NZ_CP154893
Coordinates   781036..782304 (+) Length   422 a.a.
NCBI ID   WP_088030506.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 776036..787304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS04235 (AAVD18_04235) pyrH 776831..777553 (+) 723 WP_013352282.1 UMP kinase -
  AAVD18_RS04240 (AAVD18_04240) frr 777556..778113 (+) 558 WP_013352283.1 ribosome recycling factor -
  AAVD18_RS04245 (AAVD18_04245) - 778239..779021 (+) 783 WP_013352284.1 isoprenyl transferase -
  AAVD18_RS04250 (AAVD18_04250) - 779025..779822 (+) 798 WP_014470393.1 phosphatidate cytidylyltransferase -
  AAVD18_RS04255 (AAVD18_04255) dxr 779878..781029 (+) 1152 WP_013352286.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AAVD18_RS04260 (AAVD18_04260) eeP 781036..782304 (+) 1269 WP_088030506.1 RIP metalloprotease RseP Regulator
  AAVD18_RS04265 (AAVD18_04265) proS 782337..784031 (+) 1695 WP_013352288.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46590.41 Da        Isoelectric Point: 6.1728

>NTDB_id=894367 AAVD18_RS04260 WP_088030506.1 781036..782304(+) (eeP) [Bacillus amyloliquefaciens strain Fad 11/2]
MFVNTVIAFIIIFGTLVFFHELGHLLLAQRAGILCREFAIGFGPKIFSFKKNETVYTIRLLPVGGFVRMAGEDPEMIEVK
PGYTVGLLFNKDDEVEKVIINQKEKYPDALIVEVETADLEHEMKITGYEQGKEDELSGFTVSQTSFFIVDGEEVQIAPYN
RQFGSKPVWQRIKAIAAGPIMNFILAYVILVMLGFIQGVPSNQPELGKLTDNGRAAAAGLKEGDYIQSINGEKMRSWTDI
VTAVKDNPGKKIDVAVKRDGKSFHISVTPEAVKDENKKTIGRFGSYAPTEKGAFVAIAYGATSTVDVTKAILTNLSKIVT
GQFKLDMLSGPVGIYDMTDQVAKTGIINLFQFAAFLSINLGIVNLLPIPALDGGRLLFLFIEAIRGKPINRDKEAFVVFI
GVAFLMLLMLVVTWNDIQRLFL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=894367 AAVD18_RS04260 WP_088030506.1 781036..782304(+) (eeP) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGTTCGTGAATACAGTTATCGCGTTTATTATTATTTTCGGAACGCTCGTTTTTTTCCATGAGCTGGGGCATTTACTGCT
CGCCCAAAGAGCGGGAATCCTTTGCCGTGAATTTGCGATCGGCTTCGGGCCCAAAATCTTTTCATTTAAAAAGAATGAAA
CCGTGTATACAATCAGGCTCCTTCCGGTCGGCGGGTTCGTCCGCATGGCCGGTGAAGACCCGGAGATGATTGAAGTCAAA
CCCGGTTATACCGTCGGGCTTCTTTTTAATAAAGACGACGAAGTGGAAAAAGTCATCATTAATCAAAAGGAAAAATACCC
CGACGCTTTAATTGTCGAGGTGGAGACGGCTGATCTTGAGCACGAAATGAAGATTACAGGGTATGAGCAGGGGAAAGAAG
ATGAACTGTCGGGCTTTACTGTCAGTCAGACCTCTTTTTTCATCGTAGACGGAGAAGAAGTGCAGATTGCGCCTTACAAC
CGCCAATTCGGGTCAAAACCTGTATGGCAGCGGATTAAGGCGATTGCTGCCGGTCCGATTATGAACTTCATCTTAGCATA
TGTCATTCTCGTCATGCTTGGATTCATTCAAGGCGTGCCTTCGAATCAGCCTGAGCTCGGAAAACTGACAGACAATGGAC
GCGCAGCGGCTGCCGGTTTAAAAGAAGGCGACTATATCCAGAGCATTAACGGTGAAAAGATGCGGTCATGGACTGACATC
GTGACAGCGGTAAAAGACAATCCCGGGAAAAAAATCGATGTCGCCGTGAAACGTGACGGCAAATCGTTTCATATCTCGGT
TACCCCTGAAGCCGTAAAAGATGAAAACAAAAAAACAATCGGCCGCTTCGGCTCTTATGCGCCGACTGAAAAAGGCGCGT
TTGTTGCGATCGCTTACGGCGCGACATCTACGGTTGATGTCACAAAGGCGATCTTGACCAATCTGAGCAAAATCGTGACA
GGCCAGTTTAAGCTTGATATGCTTTCAGGCCCTGTCGGAATTTATGATATGACGGATCAGGTTGCAAAAACCGGTATTAT
CAACCTATTCCAGTTTGCGGCGTTTTTAAGCATCAACCTTGGAATCGTCAACCTGCTGCCGATCCCGGCGCTTGACGGCG
GAAGACTGCTGTTTTTATTTATTGAAGCAATCCGCGGCAAGCCGATTAACCGTGACAAGGAAGCATTTGTCGTATTTATC
GGCGTCGCTTTCTTAATGCTTCTTATGCTGGTTGTCACATGGAACGATATCCAGCGTTTATTCTTATAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(8-408)

PDZ domain (PDZ_6)

(212-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

38.409

100

0.4
  eeP Streptococcus thermophilus LMG 18311

38.532

100

0.398