Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   R3Y73_RS12275 Genome accession   NZ_CP137015
Coordinates   2474559..2474678 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain CYS06     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469559..2479678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS12260 (R3Y73_12260) - 2471171..2471854 (+) 684 WP_094247243.1 response regulator transcription factor -
  R3Y73_RS12265 (R3Y73_12265) - 2471841..2473274 (+) 1434 WP_161941456.1 HAMP domain-containing sensor histidine kinase -
  R3Y73_RS12270 (R3Y73_12270) rapC 2473427..2474575 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  R3Y73_RS12275 (R3Y73_12275) phrC 2474559..2474678 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  R3Y73_RS12280 (R3Y73_12280) - 2474828..2474938 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  R3Y73_RS12285 (R3Y73_12285) - 2475018..2476382 (-) 1365 WP_176283117.1 aspartate kinase -
  R3Y73_RS12290 (R3Y73_12290) ceuB 2476797..2477750 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  R3Y73_RS12295 (R3Y73_12295) - 2477740..2478687 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  R3Y73_RS12300 (R3Y73_12300) - 2478681..2479439 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=894359 R3Y73_RS12275 WP_003156334.1 2474559..2474678(+) (phrC) [Bacillus velezensis strain CYS06]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=894359 R3Y73_RS12275 WP_003156334.1 2474559..2474678(+) (phrC) [Bacillus velezensis strain CYS06]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718