Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AAVD18_RS03515 Genome accession   NZ_CP154893
Coordinates   630553..631575 (+) Length   340 a.a.
NCBI ID   WP_013352157.1    Uniprot ID   A0A9P1JGM5
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 625553..636575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS03480 (AAVD18_03480) - 625912..626151 (+) 240 WP_003154475.1 YlbE-like family protein -
  AAVD18_RS03485 (AAVD18_03485) ylbF 626223..626672 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  AAVD18_RS03490 (AAVD18_03490) - 626731..627003 (+) 273 WP_013352153.1 YlbG family protein -
  AAVD18_RS03495 (AAVD18_03495) rsmD 627305..627859 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAVD18_RS03500 (AAVD18_03500) coaD 627864..628346 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  AAVD18_RS03505 (AAVD18_03505) ylbJ 628364..629590 (-) 1227 WP_014472570.1 sporulation integral membrane protein YlbJ -
  AAVD18_RS03510 (AAVD18_03510) - 629768..630547 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  AAVD18_RS03515 (AAVD18_03515) sepM 630553..631575 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator
  AAVD18_RS03520 (AAVD18_03520) - 631596..632843 (-) 1248 WP_013352158.1 nucleotidyltransferase -
  AAVD18_RS03525 (AAVD18_03525) - 633051..633569 (+) 519 WP_013352159.1 DUF177 domain-containing protein -
  AAVD18_RS03530 (AAVD18_03530) rpmF 633591..633770 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  AAVD18_RS03535 (AAVD18_03535) gerR 633927..634502 (+) 576 WP_013352160.1 sporulation-specific transcriptional regulator GerR -
  AAVD18_RS03540 (AAVD18_03540) - 634543..635025 (-) 483 WP_013352161.1 N-acetyltransferase -
  AAVD18_RS03545 (AAVD18_03545) - 635188..636069 (+) 882 WP_061573876.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37480.23 Da        Isoelectric Point: 9.5435

>NTDB_id=894358 AAVD18_RS03515 WP_013352157.1 630553..631575(+) (sepM) [Bacillus amyloliquefaciens strain Fad 11/2]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKIKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=894358 AAVD18_RS03515 WP_013352157.1 630553..631575(+) (sepM) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTACCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAACTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAAATAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACAGTTACCCTTAAGCTGAAATCATTCCCGGACGATCCGAAAAGAGCCGGAATCGGCGTAGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGTATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATTGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCGATTAAGTCCGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-194)

Peptidase family M50 (Peptidase_M50)

(109-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JGM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.728

100

0.394