Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   R3Y73_RS12270 Genome accession   NZ_CP137015
Coordinates   2473427..2474575 (+) Length   382 a.a.
NCBI ID   WP_003156336.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2468427..2479575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS12250 (R3Y73_12250) - 2468824..2469507 (-) 684 WP_176283115.1 ABC transporter ATP-binding protein -
  R3Y73_RS12255 (R3Y73_12255) - 2469522..2470958 (-) 1437 WP_176283116.1 ABC transporter permease -
  R3Y73_RS12260 (R3Y73_12260) - 2471171..2471854 (+) 684 WP_094247243.1 response regulator transcription factor -
  R3Y73_RS12265 (R3Y73_12265) - 2471841..2473274 (+) 1434 WP_161941456.1 HAMP domain-containing sensor histidine kinase -
  R3Y73_RS12270 (R3Y73_12270) rapC 2473427..2474575 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  R3Y73_RS12275 (R3Y73_12275) phrC 2474559..2474678 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  R3Y73_RS12280 (R3Y73_12280) - 2474828..2474938 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  R3Y73_RS12285 (R3Y73_12285) - 2475018..2476382 (-) 1365 WP_176283117.1 aspartate kinase -
  R3Y73_RS12290 (R3Y73_12290) ceuB 2476797..2477750 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  R3Y73_RS12295 (R3Y73_12295) - 2477740..2478687 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  R3Y73_RS12300 (R3Y73_12300) - 2478681..2479439 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45521.82 Da        Isoelectric Point: 5.0732

>NTDB_id=894358 R3Y73_RS12270 WP_003156336.1 2473427..2474575(+) (rapC) [Bacillus velezensis strain CYS06]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=894358 R3Y73_RS12270 WP_003156336.1 2473427..2474575(+) (rapC) [Bacillus velezensis strain CYS06]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAAGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568