Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AAFU62_RS02170 Genome accession   NZ_CP154891
Coordinates   421605..422639 (+) Length   344 a.a.
NCBI ID   WP_030126324.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 416605..427639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS02140 (AAFU62_02140) tsaE 417670..418131 (+) 462 WP_030126320.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AAFU62_RS02145 (AAFU62_02145) - 418106..418630 (+) 525 WP_111704937.1 N-acetyltransferase -
  AAFU62_RS02150 (AAFU62_02150) - 418639..419922 (+) 1284 WP_129321694.1 LCP family protein -
  AAFU62_RS02155 (AAFU62_02155) - 420033..420389 (-) 357 WP_002988657.1 hypothetical protein -
  AAFU62_RS02160 (AAFU62_02160) - 420386..420805 (-) 420 WP_011285081.1 HIT family protein -
  AAFU62_RS02165 (AAFU62_02165) pptA 420877..421602 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  AAFU62_RS02170 (AAFU62_02170) pptB 421605..422639 (+) 1035 WP_030126324.1 ABC transporter permease Regulator
  AAFU62_RS02175 (AAFU62_02175) - 422703..423494 (+) 792 WP_002983385.1 phosphotransferase family protein -
  AAFU62_RS02180 (AAFU62_02180) trmB 423494..424129 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AAFU62_RS02190 (AAFU62_02190) rimP 424388..424924 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  AAFU62_RS02195 (AAFU62_02195) nusA 425099..426256 (+) 1158 WP_129321696.1 transcription termination factor NusA -
  AAFU62_RS02200 (AAFU62_02200) - 426272..426568 (+) 297 WP_002983486.1 YlxR family protein -
  AAFU62_RS02205 (AAFU62_02205) - 426561..426863 (+) 303 WP_129321697.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40214.40 Da        Isoelectric Point: 10.3713

>NTDB_id=894274 AAFU62_RS02170 WP_030126324.1 421605..422639(+) (pptB) [Streptococcus pyogenes strain 318231]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVALSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=894274 AAFU62_RS02170 WP_030126324.1 421605..422639(+) (pptB) [Streptococcus pyogenes strain 318231]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGCGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427