Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCU34_RS11070 Genome accession   NZ_AP024911
Coordinates   2387467..2388084 (+) Length   205 a.a.
NCBI ID   WP_123016836.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2382467..2393084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS11045 panC 2383027..2383914 (+) 888 WP_123016831.1 pantoate--beta-alanine ligase -
  OCU34_RS11050 - 2383980..2384750 (-) 771 WP_123016832.1 ABC transporter permease -
  OCU34_RS11055 - 2384759..2385673 (-) 915 WP_123016833.1 ABC transporter ATP-binding protein -
  OCU34_RS11060 can 2385901..2386569 (+) 669 WP_123016834.1 carbonate dehydratase -
  OCU34_RS11065 hpt 2386613..2387143 (-) 531 WP_123016835.1 hypoxanthine phosphoribosyltransferase -
  OCU34_RS11070 hapR 2387467..2388084 (+) 618 WP_123016836.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU34_RS11075 lpdA 2388189..2389613 (-) 1425 WP_123016837.1 dihydrolipoyl dehydrogenase -
  OCU34_RS11080 aceF 2389853..2391730 (-) 1878 WP_123016838.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23690.81 Da        Isoelectric Point: 5.8745

>NTDB_id=89409 OCU34_RS11070 WP_123016836.1 2387467..2388084(+) (hapR) [Vibrio zhugei strain KCTC 62784]
MDASIERRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQYSNFL
TDNIDLDLHARQNLRNIANGIVDLANDDCHWLKVWFEWSASTREEVWPLFVSSNHTNQLLLKNMFTKGIERGELDNRYDA
EDMATLFHGLCYSLFVQTNRVPNENSVHQLVDNYLDMLCIYAKAS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=89409 OCU34_RS11070 WP_123016836.1 2387467..2388084(+) (hapR) [Vibrio zhugei strain KCTC 62784]
ATGGATGCTTCTATTGAAAGGCGGCCGCGTACCCGTTTATCTCCACAAAAGCGCAAACATCAATTAATGGAAATTGCGCT
CGAAGTTTTTGCAAAACGAGGAATTGGACGTGGTGGTCATGCGGATATCGCCGAAATTGCCCAAGTGTCAGTGGCGACCG
TTTTTAACTACTTTCCAACCCGAGAAGACTTAGTCGACGACGTACTCACCTTCGTTGTTCGTCAATACTCGAACTTCTTA
ACCGACAACATCGATCTAGATCTCCATGCTCGCCAAAACCTTAGAAACATTGCCAATGGCATTGTTGACTTGGCTAATGA
CGACTGCCACTGGCTGAAAGTCTGGTTTGAATGGAGCGCATCAACGCGTGAAGAAGTATGGCCACTGTTTGTTTCATCAA
ACCACACCAATCAACTTCTGCTGAAAAACATGTTCACCAAAGGCATTGAACGCGGTGAGTTAGATAACCGCTACGATGCT
GAAGACATGGCGACACTGTTCCATGGACTTTGTTACTCACTGTTTGTACAGACCAACCGAGTTCCAAATGAAAATAGCGT
GCATCAATTAGTTGATAACTATCTCGATATGCTATGCATCTACGCTAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

75.124

98.049

0.737
  hapR Vibrio cholerae strain A1552

75.124

98.049

0.737
  opaR Vibrio parahaemolyticus RIMD 2210633

74

97.561

0.722

Multiple sequence alignment