Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU34_RS08690 Genome accession   NZ_AP024911
Coordinates   1840953..1842323 (-) Length   456 a.a.
NCBI ID   WP_123017383.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835953..1847323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS08655 moaE 1836579..1837037 (-) 459 WP_123016435.1 molybdopterin synthase catalytic subunit MoaE -
  OCU34_RS08660 moaD 1837039..1837284 (-) 246 WP_123016436.1 molybdopterin synthase sulfur carrier subunit -
  OCU34_RS08665 moaC 1837281..1837760 (-) 480 WP_123016437.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU34_RS08670 moaB 1837773..1838279 (-) 507 WP_123016438.1 molybdenum cofactor biosynthesis protein B -
  OCU34_RS08675 moaA 1838388..1839377 (-) 990 WP_123016439.1 GTP 3',8-cyclase MoaA -
  OCU34_RS08680 yvcK 1839675..1840565 (+) 891 WP_123016440.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU34_RS08685 luxU 1840600..1840947 (-) 348 WP_123016441.1 quorum-sensing phosphorelay protein LuxU -
  OCU34_RS08690 luxO 1840953..1842323 (-) 1371 WP_123017383.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU34_RS08695 uvrB 1842634..1844664 (-) 2031 WP_123016442.1 excinuclease ABC subunit UvrB -
  OCU34_RS08705 - 1845518..1846747 (+) 1230 WP_123016443.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50797.08 Da        Isoelectric Point: 5.5362

>NTDB_id=89407 OCU34_RS08690 WP_123017383.1 1840953..1842323(-) (luxO) [Vibrio zhugei strain KCTC 62784]
MVEDTASVAALYRSYLTPLNIDITLVGTGQDAIRSIAEREPDLILLDLRLPDMTGMDVLYAVKREHPHVPIVFMTAHGSI
DTAVDAMRHGAQDFLLKPCEADRLRVTVNNAMRKASKLKDDALDPDNQNYQGFIGSSHTMQAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRVDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
FMSKEEGKGFVRMSADVVERFKHYEWPGNVRQLQNVLRNVVVLNEGREILLTMLPPPLNQPVEKAITDARPEASESSLSV
RDIRPLWLTEKLAIEQAIEACDGNIPRAAGYLDVSPSTLYRKLQTWNSQKIKEKES

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=89407 OCU34_RS08690 WP_123017383.1 1840953..1842323(-) (luxO) [Vibrio zhugei strain KCTC 62784]
ATGGTGGAAGATACGGCATCAGTGGCAGCACTGTACCGATCGTATCTGACGCCATTAAATATTGATATTACGCTTGTCGG
TACGGGTCAGGATGCGATTCGGTCGATCGCTGAGCGCGAACCTGACTTAATTTTACTCGATTTGCGCCTGCCCGATATGA
CGGGTATGGATGTGTTATACGCGGTCAAACGTGAGCATCCACATGTTCCGATTGTCTTTATGACGGCCCATGGTTCCATT
GACACCGCGGTTGACGCAATGCGCCATGGTGCACAAGACTTTTTGCTCAAACCTTGTGAAGCGGATCGCTTACGTGTCAC
GGTCAATAATGCTATGCGTAAGGCGAGTAAATTAAAAGATGATGCACTCGACCCGGATAATCAGAACTATCAGGGGTTCA
TTGGCAGTAGCCATACAATGCAAGCGGTGTATCGTACCATTGACTCTGCCGCCAGCAGTAAAGCCAGTATTTTTATTACT
GGTGAAAGTGGTACAGGCAAAGAAGTGTGTGCCGAAGCGATTCATGCAGCCAGTAAACGAGTGGATAAGCCATTTATTGC
CATTAACTGTGCGGCCATTCCGAAAGATCTCATCGAGAGTGAATTGTTCGGTCATGTCAAAGGCGCGTTTACTGGCGCTG
CCACTGATCGCCAAGGGGCCGCTGAACTTGCCGATGGTGGTACTTTGTTTTTGGATGAACTGTGCGAAATGGATTTGGAT
CTGCAAACCAAACTGTTACGTTTTATTCAGACAGGGACATTCCAGAAAGTGGGGTCTTCGAAGATGAAAAGCGTCGATGT
ACGCTTTGTCTGCGCGACCAACCGGGATCCGTGGAAAGAAGTGCAAGAAGGACGCTTTCGTGAAGACTTGTACTATCGTT
TGTACGTGATTCCACTGCATTTACCACCGTTGCGAGAGCGCGGGGAAGACGTGATTGAAATTGCCTATTCCTTATTAGGG
TTTATGTCGAAAGAGGAAGGCAAGGGCTTTGTGAGAATGTCGGCTGATGTGGTGGAGCGGTTTAAGCATTATGAATGGCC
AGGTAATGTGCGCCAGTTGCAGAACGTATTGCGTAATGTGGTGGTGTTGAATGAAGGCCGTGAAATTTTGCTGACCATGT
TGCCACCGCCACTGAATCAGCCAGTGGAGAAGGCCATTACCGATGCGCGACCAGAAGCGTCGGAATCGTCATTGTCTGTG
AGAGACATTCGTCCATTGTGGTTAACTGAGAAGCTTGCCATCGAACAAGCAATCGAGGCGTGTGATGGAAATATTCCACG
AGCGGCGGGCTATCTCGATGTGAGTCCGTCAACCTTGTATCGTAAATTACAAACGTGGAACAGTCAGAAAATCAAAGAAA
AGGAAAGTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(406-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.367

98.026

0.866
  pilR Pseudomonas aeruginosa PAK

39.421

98.465

0.388

Multiple sequence alignment