Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU34_RS07470 Genome accession   NZ_AP024911
Coordinates   1587735..1589159 (+) Length   474 a.a.
NCBI ID   WP_123016223.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582735..1594159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS07445 - 1583194..1583625 (+) 432 WP_123016218.1 hypothetical protein -
  OCU34_RS07450 yegD 1583894..1585273 (-) 1380 WP_123016219.1 molecular chaperone -
  OCU34_RS07455 - 1585504..1586313 (+) 810 WP_123016220.1 DUF2076 domain-containing protein -
  OCU34_RS07460 - 1586389..1586865 (-) 477 WP_123016221.1 NYN domain-containing protein -
  OCU34_RS07465 - 1587128..1587463 (-) 336 WP_123016222.1 hypothetical protein -
  OCU34_RS07470 sbcB 1587735..1589159 (+) 1425 WP_123016223.1 exodeoxyribonuclease I Machinery gene
  OCU34_RS07475 - 1589183..1589572 (+) 390 WP_123016224.1 CidA/LrgA family protein -
  OCU34_RS07480 - 1589572..1590258 (+) 687 WP_123016225.1 LrgB family protein -
  OCU34_RS07485 cdd 1590462..1591358 (+) 897 WP_123016226.1 cytidine deaminase -
  OCU34_RS07490 - 1591462..1591857 (-) 396 WP_123016227.1 thiol-disulfide oxidoreductase DCC family protein -
  OCU34_RS07495 - 1591922..1592614 (-) 693 WP_123016228.1 2'-5' RNA ligase family protein -
  OCU34_RS07500 purT 1592922..1594097 (+) 1176 WP_123016229.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54743.10 Da        Isoelectric Point: 5.7692

>NTDB_id=89401 OCU34_RS07470 WP_123016223.1 1587735..1589159(+) (sbcB) [Vibrio zhugei strain KCTC 62784]
MQQDHQPTFFFFDYETWGTSPAKDRPSQFAGIRTDKDFNIIGEPVVLYCQLPADYLPNPEAALITGIKPQVAMQKGVPEP
EFIQRIYQELATPNTTNLGYNNIRFDDEVTRYTAYRNFLDPYEWSYKNGNSRWDLLDVLRACHALRPEGIEWPQNEDGYT
SFKLEHLSKANGIEHENAHDALADVIATIEMAKKVKLAQPKLFDYFFSMRNKRPLNDLIDIVNMTPLMHVSGMLGRDCHY
TSWVVPVAWHPTNKNAVIMVDLAKDPQVLLDLTADELTERLYTKKEALGPDEDPVPVKLVHINKCPILAPAKTLTADNAA
QIGIDRQQCLAHLAILRENTQIREKLVTLFSHEREYPASTDVDTQLYDGFFSPTDKAAMAIIRDSHPENLGALDIQFHDP
RIKPLLFRYRARHFPWTLSESEQHRWKDHCREYFESHIESYMLNLENLMHEHESDSKKMALLKAVYQYVEHIAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=89401 OCU34_RS07470 WP_123016223.1 1587735..1589159(+) (sbcB) [Vibrio zhugei strain KCTC 62784]
ATGCAACAGGACCACCAACCAACTTTCTTTTTCTTTGACTATGAAACGTGGGGGACCAGCCCAGCAAAAGATCGGCCAAG
CCAATTTGCTGGAATTCGTACAGATAAAGATTTTAATATCATTGGTGAACCGGTCGTCCTCTATTGTCAATTACCTGCAG
ATTACCTGCCCAATCCTGAAGCTGCGTTAATTACCGGTATCAAACCTCAAGTCGCGATGCAAAAAGGCGTGCCTGAGCCT
GAATTCATTCAGCGCATTTATCAAGAGCTTGCTACCCCCAATACGACCAACCTCGGCTACAACAATATTCGTTTTGATGA
TGAAGTCACTCGCTATACCGCCTATCGTAACTTTCTTGATCCCTATGAGTGGAGTTATAAAAATGGCAACTCTCGCTGGG
ACCTCCTTGATGTACTGCGTGCTTGTCATGCCTTACGTCCTGAGGGCATCGAATGGCCTCAAAACGAGGACGGCTACACC
AGCTTTAAACTGGAACACTTGTCGAAAGCCAATGGTATAGAACACGAAAATGCGCATGATGCATTAGCCGATGTCATCGC
AACCATTGAAATGGCAAAGAAAGTAAAATTGGCTCAGCCTAAACTGTTTGACTATTTCTTTAGTATGCGCAATAAGCGTC
CACTCAACGATTTGATCGATATTGTCAATATGACGCCACTGATGCATGTCTCTGGCATGCTGGGCCGCGACTGTCACTAC
ACCAGTTGGGTCGTTCCGGTTGCGTGGCATCCCACCAATAAGAATGCGGTGATCATGGTCGATCTGGCTAAAGACCCGCA
AGTCCTCCTGGATTTAACCGCCGACGAATTGACAGAGCGACTGTACACTAAGAAAGAAGCATTAGGGCCCGACGAAGATC
CGGTACCAGTAAAACTCGTCCACATTAATAAGTGCCCAATACTGGCACCAGCGAAAACCCTAACCGCTGACAATGCGGCG
CAAATCGGCATCGATCGTCAACAGTGTTTAGCGCATCTTGCAATCCTGCGTGAGAATACACAAATTCGGGAAAAACTCGT
CACTTTGTTCTCTCATGAACGAGAATATCCGGCCAGTACCGATGTTGATACCCAACTCTATGACGGGTTCTTCTCTCCCA
CAGATAAAGCCGCTATGGCCATCATTCGCGACAGCCACCCAGAGAATCTTGGTGCATTAGACATTCAATTTCATGATCCG
CGCATCAAGCCTTTGCTGTTTCGCTATCGTGCCCGTCACTTCCCTTGGACGCTCAGCGAAAGTGAACAACATCGTTGGAA
AGATCATTGCCGAGAGTATTTCGAAAGTCATATCGAATCATACATGTTGAATTTGGAGAACTTAATGCATGAGCATGAAA
GCGACTCCAAGAAAATGGCTCTGCTGAAAGCAGTTTATCAGTACGTCGAACACATCGCGTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.264

99.789

0.751

Multiple sequence alignment