Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   R3J28_RS10845 Genome accession   NZ_CP136971
Coordinates   2332075..2333487 (-) Length   470 a.a.
NCBI ID   WP_020851962.1    Uniprot ID   A0A9Q4QU34
Organism   Xylella fastidiosa subsp. multiplex strain Santa29b     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2327075..2338487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J28_RS10830 (R3J28_10820) - 2327214..2327660 (+) 447 WP_154128445.1 pilin -
  R3J28_RS10835 (R3J28_10825) - 2328968..2329408 (+) 441 WP_375732100.1 pilin -
  R3J28_RS10840 (R3J28_10830) pilB 2330248..2331981 (+) 1734 WP_004084598.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R3J28_RS10845 (R3J28_10835) pilR 2332075..2333487 (-) 1413 WP_020851962.1 sigma-54 dependent transcriptional regulator Regulator
  R3J28_RS10850 (R3J28_10840) - 2333674..2335284 (-) 1611 WP_004084601.1 PAS domain-containing sensor histidine kinase -
  R3J28_RS10855 (R3J28_10845) sucC 2335539..2336702 (+) 1164 WP_004084603.1 ADP-forming succinate--CoA ligase subunit beta -
  R3J28_RS10860 (R3J28_10850) sucD 2336731..2337603 (+) 873 WP_004084605.1 succinate--CoA ligase subunit alpha -
  R3J28_RS10865 - 2338083..2338313 (-) 231 Protein_2124 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51368.35 Da        Isoelectric Point: 7.2158

>NTDB_id=893902 R3J28_RS10845 WP_020851962.1 2332075..2333487(-) (pilR) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=893902 R3J28_RS10845 WP_020851962.1 2332075..2333487(-) (pilR) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTTCCGATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.635

99.787

0.585
  pilR Acinetobacter baumannii strain A118

46.822

100

0.47