Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   AAG092_RS07610 Genome accession   NZ_CP154874
Coordinates   1562979..1563491 (+) Length   170 a.a.
NCBI ID   WP_373389197.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557979..1568491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS07590 (AAG092_07540) - 1559303..1560643 (+) 1341 WP_373389194.1 sigma-54-dependent transcriptional regulator -
  AAG092_RS07595 (AAG092_07545) - 1560692..1561762 (-) 1071 WP_373389195.1 NAD(P)/FAD-dependent oxidoreductase -
  AAG092_RS07600 (AAG092_07550) - 1561876..1562385 (+) 510 WP_373389196.1 GspH/FimT family pseudopilin -
  AAG092_RS07605 (AAG092_07555) - 1562491..1562982 (+) 492 WP_110681358.1 GspH/FimT family pseudopilin -
  AAG092_RS07610 (AAG092_07560) pilV 1562979..1563491 (+) 513 WP_373389197.1 type IV pilus modification protein PilV Machinery gene
  AAG092_RS07615 (AAG092_07565) - 1563491..1564258 (+) 768 WP_373389198.1 PilW family protein -
  AAG092_RS07620 (AAG092_07570) - 1564255..1564818 (+) 564 WP_110680799.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18218.95 Da        Isoelectric Point: 7.1448

>NTDB_id=893868 AAG092_RS07610 WP_373389197.1 1562979..1563491(+) (pilV) [Pseudomonas alcaligenes strain Med1]
MKHTHQRHRGFSLIEVMVTLILLTIGILGLVAMQGRGIQYTADSVQRNNAAMLASNLLEQIRANPSALNDYLLTTLPSAG
TCDTASPIQANDTAKQLTCWANKVRLMLPDAEALADQFYVCRSPSPGVCAAGQAVEIQIAWRAPGDGCLDASAAANPDPG
VCRFRLRGEL

Nucleotide


Download         Length: 513 bp        

>NTDB_id=893868 AAG092_RS07610 WP_373389197.1 1562979..1563491(+) (pilV) [Pseudomonas alcaligenes strain Med1]
ATGAAGCACACTCACCAACGCCACCGGGGCTTCAGCCTCATAGAGGTCATGGTTACCTTGATATTGCTGACGATTGGCAT
TCTTGGGCTCGTAGCCATGCAGGGTCGCGGCATTCAGTACACGGCAGACTCGGTTCAGCGCAATAACGCTGCGATGCTGG
CCAGCAATTTACTCGAGCAGATTCGCGCCAACCCCTCCGCGCTCAACGACTACCTGCTGACAACGCTGCCCAGCGCCGGA
ACCTGTGACACTGCATCCCCAATACAAGCCAACGACACAGCCAAGCAACTAACCTGCTGGGCCAATAAGGTACGCCTGAT
GCTGCCTGATGCCGAAGCGCTGGCGGATCAATTCTATGTGTGCCGCTCTCCCAGCCCCGGCGTATGTGCTGCTGGCCAGG
CCGTAGAAATTCAGATTGCCTGGCGTGCGCCCGGCGATGGCTGCCTAGACGCCTCTGCCGCCGCCAACCCAGACCCCGGT
GTATGCCGATTCCGCCTGAGGGGAGAACTGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

42.623

100

0.459