Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CJ229_RS01660 Genome accession   NZ_CP136964
Coordinates   328511..328840 (+) Length   109 a.a.
NCBI ID   WP_068128320.1    Uniprot ID   A0AAF0YLB4
Organism   Nosocomiicoccus massiliensis strain UMB0959     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323511..333840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ229_RS01630 (CJ229_001630) - 323638..325065 (+) 1428 WP_070456454.1 rhomboid family protein -
  CJ229_RS01635 (CJ229_001635) - 325096..325329 (-) 234 WP_040928349.1 DUF2759 domain-containing protein -
  CJ229_RS01640 (CJ229_001640) - 325417..326040 (+) 624 WP_070456455.1 MBL fold metallo-hydrolase -
  CJ229_RS01645 (CJ229_001645) - 326088..326333 (-) 246 WP_040928347.1 DUF2626 family protein -
  CJ229_RS01650 (CJ229_001650) - 326490..327482 (+) 993 WP_102167334.1 ATPase, T2SS/T4P/T4SS family -
  CJ229_RS01655 (CJ229_001655) comGB 327454..328500 (+) 1047 WP_083302002.1 competence type IV pilus assembly protein ComGB -
  CJ229_RS01660 (CJ229_001660) comGC 328511..328840 (+) 330 WP_068128320.1 competence type IV pilus major pilin ComGC Machinery gene
  CJ229_RS01665 (CJ229_001665) - 328818..329249 (+) 432 WP_168162104.1 type II secretion system protein -
  CJ229_RS01670 (CJ229_001670) - 329239..329502 (+) 264 WP_070622136.1 hypothetical protein -
  CJ229_RS01675 (CJ229_001675) - 329465..329887 (+) 423 WP_068128324.1 competence type IV pilus minor pilin ComGF -
  CJ229_RS01680 (CJ229_001680) - 330041..330517 (+) 477 WP_070456460.1 shikimate kinase -
  CJ229_RS01685 (CJ229_001685) gcvT 330765..331841 (+) 1077 WP_102167333.1 glycine cleavage system aminomethyltransferase GcvT -
  CJ229_RS01690 (CJ229_001690) gcvPA 331869..333212 (+) 1344 WP_068128328.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11921.90 Da        Isoelectric Point: 7.7863

>NTDB_id=893820 CJ229_RS01660 WP_068128320.1 328511..328840(+) (comGC) [Nosocomiicoccus massiliensis strain UMB0959]
MKFNIKKLIQKSKQSEGFTLIEMLLVLLVISVLIILIIPNIAAQSKNVQNTGCDAQVKMVQSQIEAYTLNEGETPTNINQ
LVPNYLTDKQTSCANGTGITIVNGQATKE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=893820 CJ229_RS01660 WP_068128320.1 328511..328840(+) (comGC) [Nosocomiicoccus massiliensis strain UMB0959]
ATGAAATTTAATATTAAAAAACTAATTCAAAAAAGTAAACAATCAGAAGGATTTACGTTAATAGAAATGTTACTCGTACT
ACTCGTCATCTCCGTGCTTATCATCTTAATTATCCCAAATATTGCAGCACAATCTAAAAACGTTCAAAACACTGGCTGTG
ACGCGCAAGTTAAGATGGTTCAAAGCCAGATTGAGGCATATACGTTAAATGAAGGTGAAACACCAACTAACATTAACCAA
TTAGTGCCAAATTACTTAACAGATAAGCAAACATCATGTGCCAATGGAACAGGGATCACAATTGTTAATGGACAAGCTAC
AAAAGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.789

87.156

0.486
  comGC Staphylococcus aureus N315

55.789

87.156

0.486