Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CYJ98_RS06200 Genome accession   NZ_CP136962
Coordinates   1332803..1334842 (-) Length   679 a.a.
NCBI ID   WP_101755428.1    Uniprot ID   A0A9X7I6E3
Organism   Neisseria perflava strain UMB0023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327803..1339842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS06190 (CYJ98_006190) - 1330191..1330985 (-) 795 WP_049348902.1 thymidylate synthase -
  CYJ98_RS06195 (CYJ98_006195) gdhA 1331400..1332734 (+) 1335 WP_101755341.1 NADP-specific glutamate dehydrogenase -
  CYJ98_RS06200 (CYJ98_006200) recG 1332803..1334842 (-) 2040 WP_101755428.1 ATP-dependent DNA helicase RecG Machinery gene
  CYJ98_RS06205 (CYJ98_006205) - 1335091..1338135 (-) 3045 WP_101755427.1 TonB-dependent siderophore receptor -
  CYJ98_RS06210 (CYJ98_006210) secB 1338398..1338832 (-) 435 WP_003745844.1 protein-export chaperone SecB -
  CYJ98_RS06215 (CYJ98_006215) grxC 1338854..1339111 (-) 258 WP_003684090.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75115.89 Da        Isoelectric Point: 6.8919

>NTDB_id=893786 CYJ98_RS06200 WP_101755428.1 1332803..1334842(-) (recG) [Neisseria perflava strain UMB0023]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYTSNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLDPLGLEVVWLSGSQRKKAKDEAKAKLADGSVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQTALPELNIGLVHGRMKATEKAEVMTEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPMLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=893786 CYJ98_RS06200 WP_101755428.1 1332803..1334842(-) (recG) [Neisseria perflava strain UMB0023]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAACTCGAAAAACTCAACCTTCACACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGCG
TGCCGTGTCAGGTCGAGGGCGAAGTCATTCATCAGGAAGTCACTTTTAAACCGCGCAAGCAGCTGATTGTCCAAATTGCC
GACGGTTCCGGAAGCGTTCTTTTTCTGCGCTTCATCCACTTTTACACCAGCAACCAGAAACAGATGGCGGTCGGTAAGCG
CATCCGCGCTGTGGGCGAAATCAAACACGGGTTTCATGGCGACGAGATGATTCACCCTAAAATCCGTGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTAAACCAACCTACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACACCGCTGCACGATACCTTGCCTGATGCTTTATTAGGCCGTCTGAAACTGCCGCACCTCGCCGA
AAGTCTGCGCCTTTTGCACTCTCCGCCGCCGAGTTTCACCATTCATCAACTTTCAGACGGCACGCTGCCTGCATGGCAAA
GGCTCAAATTCGACGAACTTTTGGCACAACAGCTTTCCATGAGGCTGGCGCGGCAGAAGCGCGTCAGCGGCACGGCGGCG
GCATTGGGCGGCGATGGCACATTGACCCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACCGATGCGCAAGAAAGGGT
CGTGTCCGAAATCTGCCGCGATATGGCGCAAACCCATCCCATGCACCGCCTGTTGCAAGGCGATGTCGGTAGCGGCAAAA
CCATTGTGGCTGCTTTGTCTGCGCTGACCGCCATTGAATCCGGCGCGCAGGTGGCTGTAATGGCGCCAACCGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGATCCGTTAGGGCTTGAAGTTGTTTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCAGCGTCAAAATCGCCGTCGGCACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTCGGCTTGGTGATTGTGGACGAACAACACCGTTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCCATGAGTTTCTT
CGCCGACTTGGACGTGTCTGTTATCGACGAATTGCCGCCCGGACGTACGCCGATTAAGACTCGCCTTGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTTTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTAGAGCAACTTCAGACGGCCTTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAGGCTACCGAAAAAGCCGAAGTCATGACGGAATTTGCCGCAGGCCGTCTGAACGTATTGG
TAGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGTGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGATTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTTGGCGCGCGGCAAAGCGGTGTCCCCATGCTGCGCTTCGCCAACCTCGAAGAAGAC
CTGCACCTTTTAGAACAAGCGCGCGAAATTGCCCCGATGCTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
GAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

RecG wedge domain (RecG_wedge)

(14-163)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.814

100

0.938