Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CYJ98_RS06250 Genome accession   NZ_CP136962
Coordinates   1345802..1346263 (+) Length   153 a.a.
NCBI ID   WP_101755338.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340802..1351263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS06225 (CYJ98_006225) - 1340899..1341567 (-) 669 WP_101755340.1 DUF3108 domain-containing protein -
  CYJ98_RS06230 (CYJ98_006230) purN 1341598..1342224 (-) 627 WP_070461396.1 phosphoribosylglycinamide formyltransferase -
  CYJ98_RS06235 (CYJ98_006235) - 1342322..1343140 (-) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  CYJ98_RS06240 (CYJ98_006240) - 1343301..1344566 (-) 1266 WP_049331560.1 Glu/Leu/Phe/Val family dehydrogenase -
  CYJ98_RS06245 (CYJ98_006245) - 1344988..1345701 (+) 714 WP_101755339.1 phosphoglycolate phosphatase -
  CYJ98_RS06250 (CYJ98_006250) recX 1345802..1346263 (+) 462 WP_101755338.1 recombination regulator RecX Regulator
  CYJ98_RS06255 (CYJ98_006255) - 1346339..1346500 (+) 162 WP_049344044.1 hypothetical protein -
  CYJ98_RS06260 (CYJ98_006260) - 1346597..1348753 (-) 2157 WP_101755337.1 RelA/SpoT family protein -
  CYJ98_RS06265 (CYJ98_006265) rpoZ 1348860..1349066 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  CYJ98_RS06270 (CYJ98_006270) gmk 1349120..1349737 (-) 618 WP_063067948.1 guanylate kinase -
  CYJ98_RS06275 (CYJ98_006275) - 1349906..1350466 (+) 561 WP_101755336.1 adenine phosphoribosyltransferase -
  CYJ98_RS06280 (CYJ98_006280) - 1350512..1351201 (-) 690 WP_419150079.1 toxin-antitoxin system YwqK family antitoxin -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17905.16 Da        Isoelectric Point: 7.1699

>NTDB_id=893787 CYJ98_RS06250 WP_101755338.1 1345802..1346263(+) (recX) [Neisseria perflava strain UMB0023]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGALRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQMALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=893787 CYJ98_RS06250 WP_101755338.1 1345802..1346263(+) (recX) [Neisseria perflava strain UMB0023]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTTGGCTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGTGCGCTCCGCCTCAAGCAAGCTTTGGCGCAA
CAAGGTATCGATGCAGACGACTGTCGGGAGTTCCTACCCGATAGGGAGGACGAGCTGCAAACCGCTATTTCCGTCTTGCG
TAAAAAATTTAAGCAAGAAGCCCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGTG
CCGACACCATTCAGATGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.703

96.732

0.752