Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CYJ98_RS04630 Genome accession   NZ_CP136962
Coordinates   1030090..1030689 (+) Length   199 a.a.
NCBI ID   WP_101755528.1    Uniprot ID   A0A9X7F9D1
Organism   Neisseria perflava strain UMB0023     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025090..1035689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS04605 (CYJ98_004605) - 1025545..1026126 (-) 582 WP_003683473.1 superoxide dismutase -
  CYJ98_RS04610 (CYJ98_004610) dnaB 1026281..1027687 (+) 1407 WP_101755525.1 replicative DNA helicase -
  CYJ98_RS04615 (CYJ98_004615) pilH 1027845..1028510 (+) 666 WP_101755526.1 pilus assembly FimT family protein Machinery gene
  CYJ98_RS04620 (CYJ98_004620) pilV 1028526..1029173 (+) 648 WP_180947862.1 type IV pilus modification protein PilV -
  CYJ98_RS04625 (CYJ98_004625) pilJ 1029176..1030111 (+) 936 WP_101755527.1 PilW family protein Machinery gene
  CYJ98_RS04630 (CYJ98_004630) pilK 1030090..1030689 (+) 600 WP_101755528.1 pilus assembly PilX family protein Machinery gene
  CYJ98_RS04635 (CYJ98_004635) - 1030694..1031182 (+) 489 WP_101755529.1 PilX family type IV pilin -
  CYJ98_RS04640 (CYJ98_004640) - 1031235..1031855 (-) 621 WP_101755530.1 Smr/MutS family protein -
  CYJ98_RS04645 (CYJ98_004645) - 1031992..1032369 (+) 378 WP_101755531.1 hypothetical protein -
  CYJ98_RS04650 (CYJ98_004650) trpE 1032505..1033980 (+) 1476 WP_101755532.1 anthranilate synthase component I -
  CYJ98_RS04655 (CYJ98_004655) - 1034024..1034593 (+) 570 WP_101755533.1 RNA 2'-phosphotransferase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22606.80 Da        Isoelectric Point: 8.7344

>NTDB_id=893782 CYJ98_RS04630 WP_101755528.1 1030090..1030689(+) (pilK) [Neisseria perflava strain UMB0023]
MRRPITLNKPERQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTTF
TKDCKNGLCSTPEVIYDGNFEKPENDKLEGDAWNRILPECIEKDEKDEKKKKKPQKCIDVNGKKYSLGENSGIKKSPRYI
IEYLGTNSADKRTIYRVTAKAWGKNDNTQVVLQSYVASE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=893782 CYJ98_RS04630 WP_101755528.1 1030090..1030689(+) (pilK) [Neisseria perflava strain UMB0023]
ATGCGCCGACCGATCACTCTAAACAAACCCGAACGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
TATCGCCCTGCTCGTGGTTACAGCCACTCAGTCCTACAATACCGAACAACGCATCAGCACTAACGATGCCGACCGCAAAC
TGGCAACCACCCTGGCCGAAGCGGCACTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACCAAAGATTGTAAAAACGGTTTATGCTCTACTCCAGAAGTTATATATGATGGTAACTTTGAAAAACCAGAAAACGACAA
ACTGGAAGGAGATGCTTGGAATCGTATACTCCCTGAATGTATAGAAAAAGATGAAAAAGATGAAAAAAAGAAGAAAAAAC
CCCAAAAATGTATTGATGTCAACGGCAAAAAATATTCTCTAGGTGAAAATAGCGGCATCAAAAAAAGTCCGCGCTACATC
ATCGAATATCTAGGCACTAACTCTGCCGACAAACGTACTATTTACCGCGTTACTGCCAAAGCATGGGGTAAGAATGACAA
TACCCAAGTCGTTCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(101-197)

PilX N-terminal (PilX_N)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

49.029

100

0.508