Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYJ98_RS04615 Genome accession   NZ_CP136962
Coordinates   1027845..1028510 (+) Length   221 a.a.
NCBI ID   WP_101755526.1    Uniprot ID   A0A9X7F8B1
Organism   Neisseria perflava strain UMB0023     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1022845..1033510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS04595 (CYJ98_004595) - 1022872..1023717 (+) 846 WP_101755523.1 DUF817 domain-containing protein -
  CYJ98_RS04600 (CYJ98_004600) - 1023778..1025319 (-) 1542 WP_101755524.1 OFA family MFS transporter -
  CYJ98_RS04605 (CYJ98_004605) - 1025545..1026126 (-) 582 WP_003683473.1 superoxide dismutase -
  CYJ98_RS04610 (CYJ98_004610) dnaB 1026281..1027687 (+) 1407 WP_101755525.1 replicative DNA helicase -
  CYJ98_RS04615 (CYJ98_004615) pilH 1027845..1028510 (+) 666 WP_101755526.1 pilus assembly FimT family protein Machinery gene
  CYJ98_RS04620 (CYJ98_004620) pilV 1028526..1029173 (+) 648 WP_180947862.1 type IV pilus modification protein PilV -
  CYJ98_RS04625 (CYJ98_004625) pilJ 1029176..1030111 (+) 936 WP_101755527.1 PilW family protein Machinery gene
  CYJ98_RS04630 (CYJ98_004630) pilK 1030090..1030689 (+) 600 WP_101755528.1 pilus assembly PilX family protein Machinery gene
  CYJ98_RS04635 (CYJ98_004635) - 1030694..1031182 (+) 489 WP_101755529.1 PilX family type IV pilin -
  CYJ98_RS04640 (CYJ98_004640) - 1031235..1031855 (-) 621 WP_101755530.1 Smr/MutS family protein -
  CYJ98_RS04645 (CYJ98_004645) - 1031992..1032369 (+) 378 WP_101755531.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24502.77 Da        Isoelectric Point: 8.1066

>NTDB_id=893780 CYJ98_RS04615 WP_101755526.1 1027845..1028510(+) (pilH) [Neisseria perflava strain UMB0023]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLSYADKNEDLRYQNDTVDLSIRSIILNGDTDKVEYSFNYIPIGNDRSALSASASKEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKICEYTSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=893780 CYJ98_RS04615 WP_101755526.1 1027845..1028510(+) (pilH) [Neisseria perflava strain UMB0023]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCAGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCAAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGACTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCACCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGTCCTACGCCGATAAAAACGAAGACTTACGCTATCAAAACGACAC
AGTTGATTTATCCATCCGCTCCATTATCCTTAATGGAGATACCGACAAAGTGGAATACAGCTTCAACTATATCCCTATCG
GCAATGACCGTTCTGCCCTCTCGGCCTCAGCTTCAAAAGAAGTCTGGTGGAGATTTCTTCCCAATGGTACATTTGGTCAT
TCAACTGATGGCAAAAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTAACGGATAAATCTGCTGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATATGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-201)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.26

100

0.548