Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CYJ98_RS02835 Genome accession   NZ_CP136962
Coordinates   632354..633157 (+) Length   267 a.a.
NCBI ID   WP_003680807.1    Uniprot ID   A0AAW6Y2T7
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627354..638157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS02805 (CYJ98_002805) - 627595..628119 (-) 525 WP_101755200.1 RDD family protein -
  CYJ98_RS02810 (CYJ98_002810) - 628211..628630 (-) 420 WP_003746427.1 hypothetical protein -
  CYJ98_RS02815 (CYJ98_002815) holA 628777..629778 (-) 1002 WP_070608832.1 DNA polymerase III subunit delta -
  CYJ98_RS02820 (CYJ98_002820) lptE 629778..630257 (-) 480 WP_101755201.1 LPS assembly lipoprotein LptE -
  CYJ98_RS02825 (CYJ98_002825) pgeF 630377..631147 (-) 771 WP_101755202.1 peptidoglycan editing factor PgeF -
  CYJ98_RS02830 (CYJ98_002830) rluD 631231..632355 (-) 1125 WP_101755203.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CYJ98_RS02835 (CYJ98_002835) comL 632354..633157 (+) 804 WP_003680807.1 outer membrane protein assembly factor BamD Machinery gene
  CYJ98_RS02840 (CYJ98_002840) - 633480..634637 (+) 1158 WP_101755204.1 ATP phosphoribosyltransferase regulatory subunit -
  CYJ98_RS02845 (CYJ98_002845) - 634681..635979 (+) 1299 WP_162817328.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.98 Da        Isoelectric Point: 8.5345

>NTDB_id=893774 CYJ98_RS02835 WP_003680807.1 632354..633157(+) (comL) [Neisseria perflava strain UMB0023]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEISVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=893774 CYJ98_RS02835 WP_003680807.1 632354..633157(+) (comL) [Neisseria perflava strain UMB0023]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTAAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTTCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGTGGTAACGAGATATCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCAGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCAGCCGATACGCGCCGCGTT
TTGGAAACCAACTTCCCTCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873