Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU60_RS05325 Genome accession   NZ_AP024907
Coordinates   1143530..1144930 (+) Length   466 a.a.
NCBI ID   WP_074374477.1    Uniprot ID   -
Organism   Vibrio spartinae strain CECT 9026     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138530..1149930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS05310 - 1139105..1140257 (+) 1153 Protein_1029 IS3 family transposase -
  OCU60_RS23005 - 1140267..1140359 (-) 93 Protein_1030 integrase -
  OCU60_RS05320 uvrB 1141226..1143256 (+) 2031 WP_074374476.1 excinuclease ABC subunit UvrB -
  OCU60_RS05325 luxO 1143530..1144930 (+) 1401 WP_074374477.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU60_RS05330 luxU 1144933..1145283 (+) 351 WP_074374478.1 quorum-sensing phosphorelay protein LuxU -
  OCU60_RS05335 yvcK 1145338..1146258 (-) 921 WP_074374479.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCU60_RS05340 moaA 1146564..1147547 (+) 984 WP_074374480.1 GTP 3',8-cyclase MoaA -
  OCU60_RS05345 moaB 1147718..1148224 (+) 507 WP_074374481.1 molybdenum cofactor biosynthesis protein B -
  OCU60_RS05350 moaC 1148243..1148722 (+) 480 WP_074374482.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU60_RS05355 moaD 1148719..1148964 (+) 246 WP_074374483.1 molybdopterin synthase sulfur carrier subunit -
  OCU60_RS05360 moaE 1148966..1149418 (+) 453 WP_074374484.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52524.16 Da        Isoelectric Point: 5.1128

>NTDB_id=89368 OCU60_RS05325 WP_074374477.1 1143530..1144930(+) (luxO) [Vibrio spartinae strain CECT 9026]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNSEEKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=89368 OCU60_RS05325 WP_074374477.1 1143530..1144930(+) (luxO) [Vibrio spartinae strain CECT 9026]
ATGCAATCTGAACAATTACCACAAAAAAGTAGATATCTGCTGATGGTTGAAGATACAGCGTCTGTTGCCGTGCTGTATCG
AACCTATCTTGAGCCTCTGGATATTGACATCAATATTGTCGGTACGGGGAAAGAGGCGTTAGAGAGTCTTGAAAAAAGAG
AACCTGATCTGATTCTGCTCGATTTACGGCTTCCGGATATGACAGGCATGGATGTGTTACATGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTCATTTTCATGACCGCTCATGGCTCAATTGATACGGCCGTCGAAGCCATGCGCTATGGTGCTCAGGA
TTTTCTAATTAAACCATGCGAAGCAGACCGATTACGAGTTACTGTAAATAATGCGATTCGTAAAGCTTCAAAAATTAAGA
GTGATTCCGATGACCCGCGTAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCCGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATTTTTATCACCGGAGAAAGCGGTACCGGGAAAGAAGTGTGTGCTGAAGC
TATTCATGCTGCAAGTCGGCGAGGTGATAAACCTTTCATTGCGATTAACTGTGCAGCCATTCCGAAAGATTTAATTGAAA
GTGAACTATTCGGTCATGTTAAAGGTGCTTTTACGGGAGCAGCAACTGATCGACAAGGTGCTGCGGAGCTCGCTGATGGC
GGGACTCTATTTCTGGATGAGCTCTGTGAGATGGATTTAGACTTACAGACTAAATTGTTGCGGTTTATCCAAACCGGTAC
GTTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTCTGTGCGACAAACCGTGACCCGTGGAAAG
AGGTTCAGGAAGGTCGTTTCCGGGAAGATTTGTACTATCGTTTATATGTGATCCCACTTCACCTGCCACCGCTTCGGGAG
CGTGGTGATGATGTCATCGAAATTGCTTATTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGATTTTGTTCGCCT
TGCCGCTGAAGTCGTGGAACGTTTTAGACAGTACGAATGGCCGGGCAATGTCCGTCAATTGCAGAATGTTTTACGTAATG
TGGTTGTGCTGAATCAGGGTAAAGAAATCACGCTGAGTATGTTACCACCCCCATTGAATCAACCGAAAGAAAGTTATCTC
CGTTTGGTTCAACCGATGATGGAAGAAAGGAAACCTTCAGTCCATGAAATATTTCCATTATGGATGACAGAAAAAATGGC
AATCGAAAATGCCATTGACGCCTGTGAAGGAAATATTCCGAAAGCCGCAGGCTATCTGGAAGTGAGCCCTTCAACCATTT
ACCGCAAGTTACAGTCTTGGAATTCAGAAGAGAAAGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.472

95.923

0.839
  pilR Acinetobacter baumannii strain A118

35.897

100

0.361

Multiple sequence alignment