Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCU60_RS02760 Genome accession   NZ_AP024907
Coordinates   608989..609609 (-) Length   206 a.a.
NCBI ID   WP_074372766.1    Uniprot ID   A0A1N6M471
Organism   Vibrio spartinae strain CECT 9026     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 603989..614609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS02750 aceF 605324..607195 (+) 1872 WP_074372764.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCU60_RS02755 lpdA 607440..608864 (+) 1425 WP_074372765.1 dihydrolipoyl dehydrogenase -
  OCU60_RS02760 hapR 608989..609609 (-) 621 WP_074372766.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU60_RS02765 hpt 610032..610565 (+) 534 WP_074372767.1 hypoxanthine phosphoribosyltransferase -
  OCU60_RS02770 can 610713..611381 (-) 669 WP_074372768.1 carbonate dehydratase -
  OCU60_RS02775 - 611802..612779 (+) 978 WP_074372769.1 ABC transporter ATP-binding protein -
  OCU60_RS02780 - 612793..613563 (+) 771 WP_074372770.1 ABC transporter permease -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24089.51 Da        Isoelectric Point: 6.4062

>NTDB_id=89366 OCU60_RS02760 WP_074372766.1 608989..609609(-) (hapR) [Vibrio spartinae strain CECT 9026]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYHLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFVNAIERGDVSDHYDP
EHLVTLFLGIFYSLFVQVNRLQDQKEIDALVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=89366 OCU60_RS02760 WP_074372766.1 608989..609609(-) (hapR) [Vibrio spartinae strain CECT 9026]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGTAAACTTCAGTTGATGGAAATTGCGCT
TGAAGTCTTCGCTAAACGAGGTATCGGACGTGGTGGACATGCAGATATCGCTGAAATTGCTCAGGTTTCTGTCGCAACAG
TATTTAACTATTTCCCAACTCGTGAGGATTTAGTTGATGATGTTCTTACTCATGTCGTTCACCAATTCTCAAACTTCCTC
GCAGACAATATCGATGTCGATAGTTATATCAAAGATAATCTCTATCATCTCACCCATAAAATGACAAAGCTGGTCTTTGA
AGATTGTCATTGGCTGAAAGTGTGGTTTGAATGGAGTGCATCGACTCGCGACGAAGTCTGGCCGTTGTTCGTATCGACTA
ACCATACCAACCGCCTGTTGGTAAAAAATATGTTTGTCAACGCAATCGAACGCGGCGATGTCAGCGATCATTATGATCCT
GAACATTTAGTCACGCTGTTCCTCGGAATTTTCTATTCCCTGTTTGTGCAAGTGAACCGTTTACAAGATCAAAAAGAGAT
CGATGCTCTCGTAAACAGCTACTTGGACATGTTATGCATTTATAACAACCGTCGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M471

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

73.892

98.544

0.728
  hapR Vibrio cholerae strain A1552

73.892

98.544

0.728
  opaR Vibrio parahaemolyticus RIMD 2210633

75.377

96.602

0.728

Multiple sequence alignment