Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RJD36_RS12305 Genome accession   NZ_CP136943
Coordinates   2430027..2430803 (+) Length   258 a.a.
NCBI ID   WP_003067028.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2425027..2435803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS12615 - 2427196..2427624 (+) 429 Protein_2370 helix-turn-helix domain-containing protein -
  RJD36_RS12295 (RJD36_12295) rlmH 2428012..2428491 (-) 480 WP_003067023.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RJD36_RS12300 (RJD36_12300) htrA 2428702..2429967 (+) 1266 WP_013852370.1 S1C family serine protease Regulator
  RJD36_RS12305 (RJD36_12305) spo0J 2430027..2430803 (+) 777 WP_003067028.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29588.21 Da        Isoelectric Point: 9.6227

>NTDB_id=893575 RJD36_RS12305 WP_003067028.1 2430027..2430803(+) (spo0J) [Streptococcus pasteurianus strain WUSP082]
MPETLTLIKIENISPNPYQPRLEFKQEELEELARSIKANGLIQPIIVRESTVFGYELIAGERRLRASKIAGLTEIPAIIK
NISNQESMQLAIVENLQRSDLNPIEEAKAYQQLLEKNQMTHEELAQFMGKSRPYITNCLRLLNLPRSLSDAVEKGDLSQG
HARVLLTLKNAGEQEKWYQKILTEDLSVRKLERLLKPAKQKKNRSKKEDIFIRNQEEELAKQLGLPVKITISKTGTKGDV
SLYFQSEEDLNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=893575 RJD36_RS12305 WP_003067028.1 2430027..2430803(+) (spo0J) [Streptococcus pasteurianus strain WUSP082]
ATGCCTGAAACACTCACATTAATCAAAATTGAAAATATCTCACCTAATCCCTACCAACCCCGTTTAGAATTTAAACAAGA
AGAGCTGGAAGAATTAGCACGTTCTATTAAAGCTAATGGGCTTATTCAGCCGATTATCGTCCGAGAATCAACTGTCTTTG
GTTATGAGCTTATTGCTGGTGAAAGACGTCTAAGAGCCTCAAAAATAGCAGGTTTAACCGAAATTCCTGCCATCATAAAA
AATATCTCCAATCAGGAGAGCATGCAGCTGGCTATCGTCGAAAATCTGCAACGTTCTGATTTAAATCCAATCGAAGAAGC
AAAAGCTTACCAGCAACTTCTGGAAAAAAATCAAATGACTCATGAAGAATTAGCACAGTTTATGGGAAAATCTCGCCCTT
ACATTACCAATTGCCTCAGATTACTTAATCTTCCTAGAAGTCTCTCTGATGCCGTTGAAAAAGGTGACCTGTCTCAAGGG
CACGCGCGTGTCCTTTTAACCCTTAAAAACGCGGGAGAACAAGAAAAGTGGTATCAAAAAATTCTAACAGAAGACCTTAG
TGTTAGAAAACTTGAACGTTTACTAAAACCTGCTAAACAGAAAAAAAATCGTTCTAAAAAGGAAGATATTTTTATTAGAA
ATCAAGAAGAAGAATTGGCTAAACAGTTAGGACTTCCTGTTAAAATTACTATCTCTAAAACCGGCACAAAAGGAGATGTG
AGTTTATATTTTCAGTCTGAAGAAGACTTAAACAGAATTATCAACAAGCTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(150-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.922

99.612

0.597