Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WHP95_RS04960 Genome accession   NZ_CP154829
Coordinates   934427..935077 (-) Length   216 a.a.
NCBI ID   WP_002894415.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0055     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 929427..940077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP95_RS04925 (WHP95_04925) - 929805..930809 (+) 1005 WP_079263945.1 hypothetical protein -
  WHP95_RS04930 (WHP95_04930) tlyA 930806..931567 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  WHP95_RS04935 (WHP95_04935) ribF 931533..932387 (+) 855 WP_002920242.1 bifunctional riboflavin kinase/FAD synthetase -
  WHP95_RS04940 (WHP95_04940) cmoA 932374..933084 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  WHP95_RS04945 (WHP95_04945) - 933074..933295 (-) 222 WP_002859102.1 EexN family lipoprotein -
  WHP95_RS04950 (WHP95_04950) - 933292..933726 (-) 435 WP_002855128.1 EexN family lipoprotein -
  WHP95_RS04955 (WHP95_04955) - 933784..934416 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  WHP95_RS04960 (WHP95_04960) CJE0566 934427..935077 (-) 651 WP_002894415.1 DNA/RNA non-specific endonuclease Regulator
  WHP95_RS04965 (WHP95_04965) nth 935074..935700 (-) 627 WP_002852225.1 endonuclease III -
  WHP95_RS04970 (WHP95_04970) peb4 935781..936602 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  WHP95_RS04975 (WHP95_04975) fbaA 936602..937666 (+) 1065 WP_002899673.1 class II fructose-bisphosphate aldolase -
  WHP95_RS04980 (WHP95_04980) - 937761..939203 (+) 1443 WP_038814036.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25417.08 Da        Isoelectric Point: 9.4459

>NTDB_id=893560 WHP95_RS04960 WP_002894415.1 934427..935077(-) (CJE0566) [Campylobacter jejuni strain Z1323HCJ0055]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DVNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNCIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=893560 WHP95_RS04960 WP_002894415.1 934427..935077(-) (CJE0566) [Campylobacter jejuni strain Z1323HCJ0055]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATGTAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACTGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.036

91.204

0.63
  CJE1441 Campylobacter jejuni RM1221

68.528

91.204

0.625