Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RJD36_RS05215 Genome accession   NZ_CP136943
Coordinates   994914..996143 (+) Length   409 a.a.
NCBI ID   WP_003065195.1    Uniprot ID   A0AAW6Y801
Organism   Streptococcus pasteurianus strain WUSP082     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 989914..1001143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS05190 (RJD36_05190) - 990517..991800 (-) 1284 WP_287935180.1 hydroxymethylglutaryl-CoA reductase, degradative -
  RJD36_RS05195 (RJD36_05195) - 991775..992953 (-) 1179 WP_117508773.1 hydroxymethylglutaryl-CoA synthase -
  RJD36_RS05200 (RJD36_05200) - 993274..994113 (+) 840 WP_069788935.1 thymidylate synthase -
  RJD36_RS05205 (RJD36_05205) - 994201..994695 (+) 495 WP_009854361.1 dihydrofolate reductase -
  RJD36_RS05210 (RJD36_05210) - 994711..994881 (+) 171 WP_003065196.1 hypothetical protein -
  RJD36_RS05215 (RJD36_05215) clpX 994914..996143 (+) 1230 WP_003065195.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RJD36_RS05220 (RJD36_05220) yihA 996154..996747 (+) 594 WP_013851951.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RJD36_RS05225 (RJD36_05225) - 996972..997715 (+) 744 Protein_964 amino acid permease -
  RJD36_RS05230 (RJD36_05230) - 997739..997966 (+) 228 WP_325052498.1 homocysteine S-methyltransferase family protein -
  RJD36_RS05235 (RJD36_05235) - 998017..998916 (+) 900 WP_117508652.1 YafY family protein -
  RJD36_RS05240 (RJD36_05240) - 998975..999583 (+) 609 WP_117508653.1 GyrI-like domain-containing protein -
  RJD36_RS05245 (RJD36_05245) - 999665..1000333 (-) 669 WP_039694591.1 YoaK family protein -
  RJD36_RS05250 (RJD36_05250) - 1000442..1001089 (-) 648 WP_048791465.1 endonuclease III domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45140.74 Da        Isoelectric Point: 4.5644

>NTDB_id=893548 RJD36_RS05215 WP_003065195.1 994914..996143(+) (clpX) [Streptococcus pasteurianus strain WUSP082]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQDR
AKRALAVAVYNHYKRVSFAESRNEEDVDLQKSNILMIGPTGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSQEEVTKVRVTKAAVEG
KDKPILEIA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=893548 RJD36_RS05215 WP_003065195.1 994914..996143(+) (clpX) [Streptococcus pasteurianus strain WUSP082]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTCTGTGGAAAAAGCCAAGATGAAGTAAAAAAAATCAT
TGCAGGAAACAATGTTTTTATCTGTAATGAGTGCGTGGCTTTGTCACAAGAAATTATCAAAGAAGAACTTGCTGAAGAAG
TTCTTGCAGATTTAGCGGAAGTTCCAAAACCTAAAGAGTTGTTAGCAACTCTTGACGAATATGTCGTTGGTCAAGACCGT
GCCAAACGCGCGCTTGCCGTAGCTGTTTATAACCATTACAAACGTGTTTCTTTTGCGGAAAGTCGCAACGAAGAAGATGT
TGATTTGCAAAAATCAAACATTTTGATGATTGGTCCCACAGGTTCAGGAAAAACATTCCTAGCTCAAACTTTGGCTAAAA
CATTGAATGTACCGTTTGCGATTGCTGATGCGACATCATTGACAGAAGCAGGATACGTTGGTGAAGATGTTGAAAATATC
CTTTTGAAATTAATTCAAGCAGCTGATTTTAATATCGAACGCGCAGAACGCGGTATCATTTACGTGGACGAAATTGATAA
AATCGCTAAAAAAGGCGAAAATGTCTCAATTACACGTGATGTTTCAGGTGAAGGTGTTCAACAAGCACTTCTTAAAATCA
TTGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGTAAGCACCCTAACCAAGAAATGATTCAAATTGATACTAAA
AATATCCTATTCATTGTCGGCGGTGCTTTTGATGGTATCGAGGATATTGTCAAACAACGTTTAGGTGAAAAGGTTATCGG
TTTTGGCCAAAATAACCGTAAAATTGATGAAAATGCTTCTTATATGCAAGAAATCATTTCAGAAGATATTCAAAAATTTG
GCTTGATTCCAGAGTTTATCGGACGTTTGCCAGTTGTAGCGGCACTTGAACAGTTGACGGCTGATGATTTGGTTCGTATC
TTGACAGAACCACGTAATGCCTTGGTTAAACAATATCAAACACTATTATCATATGATGGTGTTGAACTAGAATTTGATAA
AGATGCTTTGCAAGCTATTGCTAACAAAGCCATTGAACGTAAGACAGGAGCTCGTGGTTTACGCTCAATTATTGAGGAAA
CTATGATGGATATCATGTTTGAAATTCCTAGCCAAGAAGAAGTGACCAAGGTTCGTGTCACTAAAGCGGCTGTTGAAGGC
AAAGATAAACCAATTTTGGAAATTGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.731

100

0.897
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

98.044

0.572