Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU42_RS12865 Genome accession   NZ_AP024905
Coordinates   2910477..2911097 (+) Length   206 a.a.
NCBI ID   WP_059119918.1    Uniprot ID   A0A1R4L9G7
Organism   Vibrio ruber strain LMG 23124     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2905477..2916097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS12845 - 2906568..2907338 (-) 771 WP_077332635.1 ABC transporter permease -
  OCU42_RS12850 - 2907360..2908337 (-) 978 WP_077332633.1 ABC transporter ATP-binding protein -
  OCU42_RS12855 can 2908754..2909422 (+) 669 WP_077332631.1 carbonate dehydratase -
  OCU42_RS12860 hpt 2909501..2910034 (-) 534 WP_059119919.1 hypoxanthine phosphoribosyltransferase -
  OCU42_RS12865 opaR 2910477..2911097 (+) 621 WP_059119918.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCU42_RS12870 lpdA 2911233..2912657 (-) 1425 WP_077332629.1 dihydrolipoyl dehydrogenase -
  OCU42_RS12875 aceF 2912901..2914781 (-) 1881 WP_077332627.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24123.48 Da        Isoelectric Point: 6.2222

>NTDB_id=89352 OCU42_RS12865 WP_059119918.1 2910477..2911097(+) (opaR) [Vibrio ruber strain LMG 23124]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYHLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFVNAIERGDVSDHYDS
EHLVTLFLGIFYSLFVQVNRLQDQKEIDDLVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=89352 OCU42_RS12865 WP_059119918.1 2910477..2911097(+) (opaR) [Vibrio ruber strain LMG 23124]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGTAAACTTCAGCTCATGGAAATTGCGCT
TGAAGTTTTCGCCAAGCGAGGTATCGGACGTGGTGGACATGCAGATATCGCTGAGATTGCTCAGGTTTCTGTTGCAACAG
TATTTAACTATTTCCCAACGCGTGAGGATTTAGTTGATGATGTGCTCACTCATGTCGTTCACCAATTCTCAAACTTCCTC
GCAGACAATATTGATGTAGACAGTTATATCAAAGATAACCTCTATCATCTCACACATAAAATGACAAAATTGGTATTTGA
AGATTGTCATTGGCTGAAAGTGTGGTTTGAGTGGAGTGCATCAACTCGCGATGAAGTCTGGCCGCTATTCGTATCGACCA
ACCATACAAACCGCCTGCTGGTGAAAAACATGTTTGTCAACGCAATCGAACGCGGTGATGTCAGCGATCATTATGATTCT
GAGCACTTAGTCACCCTGTTCCTCGGGATCTTCTACTCTCTGTTTGTTCAAGTAAACCGTTTACAAGATCAAAAAGAGAT
TGATGATCTGGTGAACAGCTATCTGGACATGTTATGCATTTATAACAACCGTCGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4L9G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

75.879

96.602

0.733
  hapR Vibrio cholerae C6706

73.892

98.544

0.728
  hapR Vibrio cholerae strain A1552

73.892

98.544

0.728

Multiple sequence alignment