Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU42_RS01165 Genome accession   NZ_AP024905
Coordinates   263785..264789 (+) Length   334 a.a.
NCBI ID   WP_077336270.1    Uniprot ID   A0A1R4LLE8
Organism   Vibrio ruber strain LMG 23124     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 258785..269789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS01150 - 259278..260555 (-) 1278 WP_077336268.1 malic enzyme-like NAD(P)-binding protein -
  OCU42_RS01155 rpmE 260858..261079 (-) 222 WP_077336269.1 50S ribosomal protein L31 -
  OCU42_RS01160 priA 261331..263535 (+) 2205 WP_077336420.1 primosomal protein N' -
  OCU42_RS01165 cytR 263785..264789 (+) 1005 WP_077336270.1 DNA-binding transcriptional regulator CytR Regulator
  OCU42_RS01170 ftsN 264895..265443 (+) 549 WP_077336271.1 cell division protein FtsN -
  OCU42_RS01175 hslV 265585..266124 (+) 540 WP_077336272.1 ATP-dependent protease subunit HslV -
  OCU42_RS01180 hslU 266169..267500 (+) 1332 WP_077336273.1 HslU--HslV peptidase ATPase subunit -
  OCU42_RS01185 - 267646..268563 (+) 918 WP_077336274.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU42_RS01190 rraA 268639..269202 (+) 564 WP_077336421.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36664.20 Da        Isoelectric Point: 6.4970

>NTDB_id=89332 OCU42_RS01165 WP_077336270.1 263785..264789(+) (cytR) [Vibrio ruber strain LMG 23124]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDASKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHQKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSDPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89332 OCU42_RS01165 WP_077336270.1 263785..264789(+) (cytR) [Vibrio ruber strain LMG 23124]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCATTGATGAATCCCGAAAA
AGTGTCGCCGACGACAAGAAAGCGGGTTGAAGATGCAGTGCTTGAAGCCGGATATTCTCCGAATTCACTGGCACGTAATT
TAAGACGTAACGAGTCAAAGACGATTGTTGCGATTGTTCCCGATATTTGTGACCCGTATTTTACTGAAATTATTCGGGGC
ATTGAGGATGCAGCCGTCGAGCATGGTTACTTGGTGCTACTGGGTGACAGCGGACAACAGAAAAAACGCGAAAGCTCCTT
TGTCAATCTGGTCTTTACCAAGCAAGCTGACGGAATGCTGCTACTGGGAACCGATTTACCGTTTGATGCCAGTAAGTCTG
AACAGAAAAACCTACCACCGATGGTGATGGCCTGTGAGTACGCGCCGGAACTGGAGCTGCCGACAGTCCATATTGATAAT
CTGACTTCTGCATTTGAAGTTGTGAATTATCTCACTCAGATGGGACACCAAAAAATTGGTGAAATTGCCGGCCCCGATTC
AGCAGCGTTGTGTCATTTCCGTCATCAGGGATATATGCAGGCGCTCCGACGTGCCGGAATAACCATGAATCCTGCTTATC
ATTATAAAGGTGATTTCAGTTTTGAAGCCGGCGTGAAAGCGATTCGGCTCCTTTTGGGGTTGTCTGATCCACCGGGAGCG
GTTTTCTGCCACAATGACATGATGGCTATCGGTGCGATTCAAGAAGCAAAGCGTCTGGGCGTCAGAGTCCCTCAGGATCT
GTCGGTGGTTGGTTTTGACGATATTAACTTTGCGCAATATTGTGATCCACCGTTAACCACCGTGTCCCAGCCCCGGTATG
AAATTGGTCGTCAGGCGATGCTGATGATGTTGGAAGTGCTTCGGGGACACGATGTTCGGGCCGGCTCGCGTTTGCTGGAA
ACAAAACTGGTGATTCGTGAAAGTGTTGCTGCTCCTCGTGGGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LLE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.048

99.401

0.865
  cytR Vibrio parahaemolyticus RIMD 2210633

84.384

99.701

0.841

Multiple sequence alignment