Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV37_RS17795 Genome accession   NZ_AP024904
Coordinates   607388..608470 (-) Length   360 a.a.
NCBI ID   WP_038184883.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 602388..613470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS17780 - 602486..603964 (-) 1479 WP_038185222.1 cobyric acid synthase -
  OCV37_RS17785 - 604145..604672 (+) 528 WP_038184885.1 hypothetical protein -
  OCV37_RS17790 luxQ 604769..607351 (-) 2583 WP_038184884.1 LuxQ periplasmic sensor domain-containing protein Regulator
  OCV37_RS17795 luxP 607388..608470 (-) 1083 WP_038184883.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV37_RS17800 traF 608548..609693 (-) 1146 WP_038184881.1 conjugal transfer protein TraF -
  OCV37_RS17805 - 609770..610060 (-) 291 WP_038184879.1 GIY-YIG nuclease family protein -
  OCV37_RS17810 - 610067..610717 (-) 651 WP_038185218.1 YceH family protein -
  OCV37_RS17815 - 611197..611514 (+) 318 WP_021018699.1 DUF496 family protein -
  OCV37_RS17820 - 611754..612227 (+) 474 WP_038184870.1 peroxiredoxin -
  OCV37_RS17825 - 612316..612729 (-) 414 WP_211252096.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41362.19 Da        Isoelectric Point: 6.9340

>NTDB_id=89328 OCV37_RS17795 WP_038184883.1 607388..608470(-) (luxP) [Vibrio rhizosphaerae strain LMG 23790]
MRLFGVILSACFLIYHSAAYALSGYWHYNEFLDLNPEQKQLTLSLANAVRLDPKPLTTAQKHPVKISVIYPGQQVSDYWS
RNIRAFELRLNELGIKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHKKFIEHVLRGRETKLILQNVTTP
VKDWAHRQPWMYIGFDHEIGTSLLVDYFKQKLPPHSPYSVLYFSQGYVSEARGDTFIQAMTDYPLVSSFYTQANQESAYK
ITLENMRENPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEALQHHDLDVTVMRMNDDTGVAMAEAIKWD
LEGKKVPTVYSGDFEVVSSTDKPERLEALKQRAFRYSDRH

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=89328 OCV37_RS17795 WP_038184883.1 607388..608470(-) (luxP) [Vibrio rhizosphaerae strain LMG 23790]
ATGAGACTTTTTGGAGTTATTTTAAGTGCCTGCTTTCTTATTTATCATTCAGCGGCATATGCGTTGAGTGGCTATTGGCA
TTACAACGAATTTCTGGATTTAAACCCCGAACAAAAACAACTGACACTTTCTTTGGCAAATGCGGTTCGGCTTGACCCCA
AGCCATTAACGACGGCTCAGAAACATCCAGTAAAAATATCCGTTATTTATCCCGGCCAGCAAGTGTCGGATTATTGGAGC
CGTAATATCCGGGCGTTTGAATTACGTTTAAACGAGTTGGGGATTAAGTATGAAATTCATCAGGTGTTTACCCGTCCCAA
TCTGGATATCCGCCAACAAAGTCTTTCTCTGATGGAAGCCTTAAAGAATAAATCCGATTATTTGATTTTTACCCTTGATA
CCACCCGACACAAAAAATTCATTGAACATGTGTTAAGAGGCAGAGAAACCAAACTGATTCTGCAAAATGTCACCACACCG
GTGAAAGATTGGGCTCACCGACAACCGTGGATGTATATCGGCTTCGACCATGAAATAGGCACCAGTTTGTTGGTGGACTA
TTTTAAGCAAAAATTGCCACCCCATTCCCCTTATTCTGTTTTGTATTTCTCACAAGGCTATGTGAGTGAAGCACGAGGCG
ATACGTTTATTCAAGCGATGACCGATTACCCACTCGTATCCTCATTTTATACGCAGGCCAATCAGGAAAGTGCTTATAAA
ATTACGCTTGAGAATATGAGGGAAAATCCGGAGATTAAATTATTGTATGCCTGTTCAACCGATGTTGCGCTCGGGGCAGT
CAAAGCGTTGAAAGAGCTGGGCAGAGAGGATGTCCTCATCAATGGCTGGGGCGGCGGTTCTGCCGAACTGGAAGCTTTGC
AGCATCATGATTTGGATGTCACGGTCATGCGGATGAATGATGACACCGGTGTCGCAATGGCGGAGGCCATCAAGTGGGAT
CTGGAAGGTAAAAAAGTGCCAACGGTTTATTCCGGGGACTTTGAGGTGGTTTCCAGTACGGATAAACCCGAGAGACTTGA
GGCATTAAAACAACGTGCATTCCGCTATTCGGATCGGCACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(66-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

67.036

100

0.672

Multiple sequence alignment