Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   R1Y14_RS10355 Genome accession   NZ_CP136899
Coordinates   2009785..2010711 (-) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae strain ST62     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004785..2015711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS10335 (R1Y14_10335) treR 2005910..2006620 (+) 711 WP_000760672.1 trehalose operon repressor Regulator
  R1Y14_RS10340 (R1Y14_10340) - 2006653..2007456 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  R1Y14_RS10345 (R1Y14_10345) - 2007469..2008346 (-) 878 Protein_2010 ABC transporter permease -
  R1Y14_RS10350 (R1Y14_10350) - 2008358..2009167 (-) 810 Protein_2011 ABC transporter substrate-binding protein -
  R1Y14_RS10355 (R1Y14_10355) amiF 2009785..2010711 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  R1Y14_RS10360 (R1Y14_10360) amiE 2010722..2011789 (-) 1068 WP_000159552.1 ABC transporter ATP-binding protein Regulator
  R1Y14_RS10365 (R1Y14_10365) amiD 2011798..2012724 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R1Y14_RS10370 (R1Y14_10370) amiC 2012724..2014220 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=893269 R1Y14_RS10355 WP_001291296.1 2009785..2010711(-) (amiF) [Streptococcus pneumoniae strain ST62]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=893269 R1Y14_RS10355 WP_001291296.1 2009785..2010711(-) (amiF) [Streptococcus pneumoniae strain ST62]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTAGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8U5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844