Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R1Y14_RS10335 Genome accession   NZ_CP136899
Coordinates   2005910..2006620 (+) Length   236 a.a.
NCBI ID   WP_000760672.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000910..2011620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS10320 (R1Y14_10320) - 2001451..2001699 (-) 249 WP_000364990.1 YneF family protein -
  R1Y14_RS10325 (R1Y14_10325) treC 2001955..2003580 (-) 1626 WP_000171223.1 alpha,alpha-phosphotrehalase -
  R1Y14_RS10330 (R1Y14_10330) treP 2003758..2005725 (-) 1968 WP_000514358.1 PTS system trehalose-specific EIIBC component -
  R1Y14_RS10335 (R1Y14_10335) treR 2005910..2006620 (+) 711 WP_000760672.1 trehalose operon repressor Regulator
  R1Y14_RS10340 (R1Y14_10340) - 2006653..2007456 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  R1Y14_RS10345 (R1Y14_10345) - 2007469..2008346 (-) 878 Protein_2010 ABC transporter permease -
  R1Y14_RS10350 (R1Y14_10350) - 2008358..2009167 (-) 810 Protein_2011 ABC transporter substrate-binding protein -
  R1Y14_RS10355 (R1Y14_10355) amiF 2009785..2010711 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=893268 R1Y14_RS10335 WP_000760672.1 2005910..2006620(+) (treR) [Streptococcus pneumoniae strain ST62]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYIVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=893268 R1Y14_RS10335 WP_000760672.1 2005910..2006620(+) (treR) [Streptococcus pneumoniae strain ST62]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATCGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATATCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589