Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   R1Y14_RS10370 Genome accession   NZ_CP136899
Coordinates   2012724..2014220 (-) Length   498 a.a.
NCBI ID   WP_000759905.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007724..2019220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS10350 (R1Y14_10350) - 2008358..2009167 (-) 810 Protein_2011 ABC transporter substrate-binding protein -
  R1Y14_RS10355 (R1Y14_10355) amiF 2009785..2010711 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  R1Y14_RS10360 (R1Y14_10360) amiE 2010722..2011789 (-) 1068 WP_000159552.1 ABC transporter ATP-binding protein Regulator
  R1Y14_RS10365 (R1Y14_10365) amiD 2011798..2012724 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R1Y14_RS10370 (R1Y14_10370) amiC 2012724..2014220 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  R1Y14_RS10375 (R1Y14_10375) amiA3 2014287..2016266 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  R1Y14_RS10380 (R1Y14_10380) - 2016952..2018145 (-) 1194 WP_000835622.1 O-antigen ligase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55681.25 Da        Isoelectric Point: 9.4436

>NTDB_id=893272 R1Y14_RS10370 WP_000759905.1 2012724..2014220(-) (amiC) [Streptococcus pneumoniae strain ST62]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGT
LTFLLALPTIALVYIVRLIGSSIALPDSFPILGAGDWRSYVLPAVILGLLGAPVTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=893272 R1Y14_RS10370 WP_000759905.1 2012724..2014220(-) (amiC) [Streptococcus pneumoniae strain ST62]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTATCAACAGGGACT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTGCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
TTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763