Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R1Y14_RS08925 Genome accession   NZ_CP136899
Coordinates   1735077..1736309 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain ST62     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1730077..1741309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS08895 (R1Y14_08895) - 1730267..1731232 (+) 966 WP_000081010.1 NAD(P)/FAD-dependent oxidoreductase -
  R1Y14_RS08900 (R1Y14_08900) whiA 1731266..1732177 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  R1Y14_RS08905 (R1Y14_08905) - 1732174..1733151 (-) 978 WP_001231085.1 YvcK family protein -
  R1Y14_RS08910 (R1Y14_08910) rapZ 1733148..1734038 (-) 891 WP_000163033.1 RNase adapter RapZ -
  R1Y14_RS08915 (R1Y14_08915) - 1734090..1734470 (-) 381 WP_001140412.1 RidA family protein -
  R1Y14_RS08920 (R1Y14_08920) yihA 1734481..1735068 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R1Y14_RS08925 (R1Y14_08925) clpX 1735077..1736309 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R1Y14_RS08930 (R1Y14_08930) - 1736341..1736511 (-) 171 WP_000442275.1 hypothetical protein -
  R1Y14_RS08935 (R1Y14_08935) - 1736511..1737017 (-) 507 WP_000162484.1 dihydrofolate reductase -
  R1Y14_RS08940 (R1Y14_08940) - 1737147..1737665 (-) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  R1Y14_RS08945 (R1Y14_08945) lytC 1738161..1739666 (-) 1506 WP_078152441.1 choline binding-anchored murein hydrolase LytC -
  R1Y14_RS08950 (R1Y14_08950) tpiA 1739704..1740462 (-) 759 WP_000087905.1 triose-phosphate isomerase -
  R1Y14_RS08955 (R1Y14_08955) - 1740560..1741237 (-) 678 WP_000221604.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=893261 R1Y14_RS08925 WP_000106346.1 1735077..1736309(-) (clpX) [Streptococcus pneumoniae strain ST62]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=893261 R1Y14_RS08925 WP_000106346.1 1735077..1736309(-) (clpX) [Streptococcus pneumoniae strain ST62]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCATATATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACTTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561