Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R1Y14_RS01975 Genome accession   NZ_CP136899
Coordinates   361453..362814 (+) Length   453 a.a.
NCBI ID   WP_078152438.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 356453..367814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS01940 (R1Y14_01940) - 356834..357607 (-) 774 Protein_337 transposase -
  R1Y14_RS01945 (R1Y14_01945) comW 357872..358108 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  R1Y14_RS01950 (R1Y14_01950) - 358339..359625 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R1Y14_RS01955 (R1Y14_01955) tadA 359826..360293 (+) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  R1Y14_RS01965 (R1Y14_01965) - 360479..360922 (+) 444 WP_000701993.1 dUTP diphosphatase -
  R1Y14_RS01970 (R1Y14_01970) - 360924..361439 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  R1Y14_RS01975 (R1Y14_01975) radA 361453..362814 (+) 1362 WP_078152438.1 DNA repair protein RadA Machinery gene
  R1Y14_RS01980 (R1Y14_01980) - 362887..363384 (+) 498 WP_001809263.1 carbonic anhydrase -
  R1Y14_RS01985 (R1Y14_01985) - 363409..364223 (+) 815 Protein_345 PrsW family intramembrane metalloprotease -
  R1Y14_RS01990 (R1Y14_01990) - 364368..365336 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  R1Y14_RS01995 (R1Y14_01995) - 365470..365751 (-) 282 Protein_347 ISL3 family transposase -
  R1Y14_RS02000 (R1Y14_02000) - 365877..366784 (-) 908 Protein_348 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49447.92 Da        Isoelectric Point: 6.5137

>NTDB_id=893231 R1Y14_RS01975 WP_078152438.1 361453..362814(+) (radA) [Streptococcus pneumoniae strain ST62]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLQQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=893231 R1Y14_RS01975 WP_078152438.1 361453..362814(+) (radA) [Streptococcus pneumoniae strain ST62]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGATCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCAACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTTATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTAGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAACCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.779

100

0.998
  radA Streptococcus pneumoniae D39

99.779

100

0.998
  radA Streptococcus pneumoniae R6

99.779

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.779

100

0.998
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.338

100

0.993
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629