Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R1Y14_RS01945 Genome accession   NZ_CP136899
Coordinates   357872..358108 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 352872..363108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS01940 (R1Y14_01940) - 356834..357607 (-) 774 Protein_337 transposase -
  R1Y14_RS01945 (R1Y14_01945) comW 357872..358108 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  R1Y14_RS01950 (R1Y14_01950) - 358339..359625 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R1Y14_RS01955 (R1Y14_01955) tadA 359826..360293 (+) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  R1Y14_RS01965 (R1Y14_01965) - 360479..360922 (+) 444 WP_000701993.1 dUTP diphosphatase -
  R1Y14_RS01970 (R1Y14_01970) - 360924..361439 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  R1Y14_RS01975 (R1Y14_01975) radA 361453..362814 (+) 1362 WP_078152438.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=893230 R1Y14_RS01945 WP_000939546.1 357872..358108(+) (comW) [Streptococcus pneumoniae strain ST62]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=893230 R1Y14_RS01945 WP_000939546.1 357872..358108(+) (comW) [Streptococcus pneumoniae strain ST62]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756