Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV37_RS12285 Genome accession   NZ_AP024903
Coordinates   2828253..2829239 (-) Length   328 a.a.
NCBI ID   WP_038183088.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823253..2834239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS12270 - 2823383..2825440 (+) 2058 WP_051680681.1 ATP-binding protein -
  OCV37_RS12275 hpxO 2825518..2826675 (-) 1158 WP_211252071.1 FAD-dependent urate hydroxylase HpxO -
  OCV37_RS12280 - 2827109..2828161 (+) 1053 WP_038183089.1 pectate lyase -
  OCV37_RS12285 rpoS 2828253..2829239 (-) 987 WP_038183088.1 RNA polymerase sigma factor RpoS Regulator
  OCV37_RS12290 - 2829321..2830229 (-) 909 WP_038183086.1 peptidoglycan DD-metalloendopeptidase family protein -
  OCV37_RS12295 - 2830232..2830858 (-) 627 WP_038183084.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV37_RS12300 surE 2830864..2831604 (-) 741 WP_038183082.1 5'/3'-nucleotidase SurE -
  OCV37_RS12305 truD 2831608..2832654 (-) 1047 WP_038183080.1 tRNA pseudouridine(13) synthase TruD -
  OCV37_RS12310 ispF 2832741..2833214 (-) 474 WP_038183077.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV37_RS12315 ispD 2833234..2833959 (-) 726 WP_038183075.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37720.55 Da        Isoelectric Point: 4.5766

>NTDB_id=89318 OCV37_RS12285 WP_038183088.1 2828253..2829239(-) (rpoS) [Vibrio rhizosphaerae strain LMG 23790]
MSKSNSVTKVDQFDFDSEAFDLNTLDNEVSSDAVSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIALELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=89318 OCV37_RS12285 WP_038183088.1 2828253..2829239(-) (rpoS) [Vibrio rhizosphaerae strain LMG 23790]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGAAGCGTTTGATCTCAATACATTGGACAA
TGAGGTCAGTTCCGACGCTGTTTCGGTCGAAACTCGGGAAGATTATGAAGTCACTTCTAAGAGTTTGGACGCAACTCAAC
TCTATTTAGGCGAAATTGGTTTTTCTCCTTTGTTGACCGCAGAGGAAGAAATCTTGTACGCGCGCCGGGCTCTCCGAGGT
GATGAGGCCGCCCGTAAACGGATGATTGAGAGTAATTTACGTCTCGTTGTCAAAATATCTCGCCGGTATAGTAACCGTGG
TCTGGCTTTGCTGGACTTAATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCTGAAAGAGGAT
TTCGTTTTTCTACGTATGCAACCTGGTGGATCCGGCAAACGATAGAACGGGCACTGATGAATCAAACCAGAACGATTCGT
TTACCTATTCACGTTGTCAAAGAACTAAATATTTATTTACGTACAGCACGTGAGCTGTCACAAAAACTAGACCATGAACC
GACAGCCGAAGACATTGCGTTGGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGTCTGAACGAACGTATTA
GTTCCGTTGATACGCCAATTGGTGGTGATGGTGATAAAGCATTGTTGGATATTATTCCCGATGCCAAACACTATGATCCA
GAATATTCGACAGAAGATGATGATATTAAGTCTTCACTCCTACATTGGTTAGATGAACTGAATCCGAAACAAAAAGAAGT
GTTGGCAAGACGCTTTGGCTTGCTCGGATATGAACCATCCACTTTAGAAGAGGTTGGTAAAGAAATAAATCTAACCCGTG
AACGGGTTCGCCAAATTCAAGTCGAAGGACTACGCCGTTTGAGAGAAATTTTACTTAAACAAGGCTTGAATATGGAGTCT
TTATTCGATGTAGAAAGTGAAGAATAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 3 (Sigma70_r3)

(168-242)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.133

100

0.841

Multiple sequence alignment