Detailed information NTG0893169

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: R0135_RS17100
• Genome accession: NZ_CP136864
• Coordinates: 3814017..3815306 (-)
• Length: 429 a.a.
• NCBI ID: WP_407349943.1
• Uniprot ID: -
• Organism: Congregibacter variabilis strain IMCC43200
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3809017..3820306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R0135_RS17085 (R0135_17015)	-	3809082..3812783 (+)	3702	WP_407348114.1	pilus assembly protein	-
R0135_RS17090 (R0135_17020)	-	3812856..3813317 (+)	462	WP_407348115.1	type IV pilin protein	-
R0135_RS17095	-	3813354..3814004 (-)	651	WP_407348116.1	GspH/FimT family pseudopilin	-
R0135_RS17100 (R0135_17025)	pilR	3814017..3815306 (-)	1290	WP_407349943.1	sigma-54-dependent transcriptional regulator	Regulator
R0135_RS17105 (R0135_17030)	-	3815397..3817016 (-)	1620	WP_407348117.1	sensor histidine kinase	-
R0135_RS17110 (R0135_17035)	-	3817151..3818773 (+)	1623	WP_407348118.1	NAD+ synthase	-
R0135_RS17115 (R0135_17040)	-	3818783..3819697 (-)	915	WP_407348119.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 46391.84 Da
• Isoelectric Point: 4.8669

>NTDB_id=893169 R0135_RS17100 WP_407349943.1 3814017..3815306(-) (pilR) [Congregibacter variabilis strain IMCC43200]
MGLDTVSAATLGEAYELLDDESTLQLCLTDMRLPDGNGIDLVEHIQATQPSLPVAMITAHGNVDSAIRALKAGAFDFISK
PVALEKLRSLISAALELEPIESITGAPATDELIGNTDAMLRLRKQIDKLARSQAPVHIRGESGSGKEVVARNIHGRGPRA
AGPFVAVNCGAIPAELIESELFGHLKGSFTGASRDKLGLFQAAEGGTLFLDEVADLPLAMQVKLLRAIQEKRVRPVGANE
EVATDVRLLSATHKSLAKEVADGRFREDLFFRVNVIELEVPSLRERKNDIAVLANALIKRIAEAHHSETPKISDAALSTM
ESYAFPGNVRELENMLERAFALCEGEVITTEDLQLGSIETLAPTPENHTQGAGLDAVAGDLDAYLADIERGILSEALDAH
RWNRTETAKALGVSFRSLRYRMKKLQLDD

Nucleotide

• Length: 1290 bp

>NTDB_id=893169 R0135_RS17100 WP_407349943.1 3814017..3815306(-) (pilR) [Congregibacter variabilis strain IMCC43200]
ATGGGCCTGGACACCGTGAGCGCTGCCACATTAGGCGAAGCCTACGAACTGCTGGACGACGAAAGCACCTTGCAGCTGTG
CCTGACCGACATGCGGCTTCCAGACGGCAATGGTATCGATCTGGTGGAACACATTCAGGCTACGCAACCCTCCCTTCCCG
TGGCCATGATTACGGCACATGGCAATGTCGATAGCGCCATTCGTGCGCTCAAGGCTGGCGCCTTCGATTTCATCAGTAAA
CCCGTAGCGCTGGAAAAACTTCGCTCTTTGATCAGCGCGGCCCTGGAGCTTGAGCCCATCGAGTCAATCACGGGGGCTCC
AGCCACCGATGAGCTCATCGGTAATACCGATGCGATGCTCCGGCTGCGCAAACAGATTGACAAGCTTGCTAGAAGCCAGG
CGCCCGTGCACATCCGCGGAGAATCGGGAAGCGGTAAAGAGGTCGTGGCGCGGAATATTCATGGTCGCGGCCCGCGCGCT
GCCGGCCCCTTTGTGGCGGTCAACTGTGGAGCGATACCCGCTGAACTCATTGAGAGCGAACTGTTTGGCCATCTCAAGGG
GAGCTTTACTGGCGCGAGTCGCGACAAGCTCGGACTCTTTCAAGCCGCAGAAGGAGGAACGCTGTTTCTTGATGAAGTCG
CGGACCTACCCCTGGCGATGCAGGTCAAGTTGTTACGCGCCATTCAGGAGAAGCGCGTACGCCCGGTGGGTGCGAACGAA
GAAGTGGCTACCGATGTGCGTTTACTGTCTGCCACTCACAAGAGTCTCGCCAAGGAAGTCGCCGACGGCCGCTTTCGCGA
AGATCTGTTCTTTAGAGTAAACGTGATCGAACTTGAAGTACCCAGCCTACGGGAGCGGAAAAACGACATCGCAGTACTCG
CAAATGCGCTGATAAAGCGCATTGCGGAGGCTCACCATAGCGAGACTCCCAAGATCAGCGACGCCGCACTTTCAACCATG
GAAAGCTATGCATTTCCCGGTAACGTGCGTGAACTGGAAAACATGTTGGAGCGTGCCTTTGCTCTGTGTGAGGGCGAAGT
GATAACCACGGAGGACCTCCAATTAGGCAGTATTGAAACACTTGCCCCAACGCCAGAGAATCACACACAAGGTGCCGGCC
TCGATGCGGTCGCCGGCGATCTAGATGCTTATCTAGCCGACATTGAACGGGGAATACTCAGCGAGGCACTCGATGCTCAC
CGCTGGAATCGTACAGAAACAGCCAAGGCACTAGGAGTAAGCTTCCGCAGTCTTCGGTATCGAATGAAGAAACTCCAGCT
AGATGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (5-91)

• Sigma-54 interaction domain (Sigma54_activat) (112-278)

• Bacterial regulatory protein, Fis family (HTH_8) (385-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.346	99.767	0.592
pilR	Acinetobacter baumannii strain A118	48.409	100	0.497