Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK13_RS20015 Genome accession   NZ_AP027697
Coordinates   4101068..4101805 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSS-12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4096068..4106805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK13_RS19985 (VEE19_38530) yfiL 4096226..4096591 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABK13_RS19990 (VEE19_38540) aroF 4096801..4097871 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK13_RS19995 (VEE19_38550) tyrA 4097882..4099003 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK13_RS20000 (VEE19_38560) pheA 4099046..4100206 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK13_RS20005 pheL 4100305..4100352 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABK13_RS20010 (VEE19_38570) raiA 4100456..4100797 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK13_RS20015 (VEE19_38580) comL 4101068..4101805 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK13_RS20020 (VEE19_38590) rluD 4101940..4102920 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK13_RS20025 (VEE19_38600) yfiH 4102917..4103648 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  AABK13_RS20030 (VEE19_38610) clpC 4103778..4106351 (+) 2574 WP_074478306.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=89308 AABK13_RS20015 WP_000197686.1 4101068..4101805(-) (comL) [Escherichia coli strain PSS-12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=89308 AABK13_RS20015 WP_000197686.1 4101068..4101805(-) (comL) [Escherichia coli strain PSS-12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376