Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV37_RS05110 Genome accession   NZ_AP024903
Coordinates   1185348..1186748 (+) Length   466 a.a.
NCBI ID   WP_261888124.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180348..1191748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS05090 budA 1180534..1181319 (-) 786 WP_038181858.1 acetolactate decarboxylase -
  OCV37_RS05095 - 1181417..1182304 (+) 888 WP_038181856.1 LysR family transcriptional regulator -
  OCV37_RS05105 uvrB 1183058..1185088 (+) 2031 WP_038181854.1 excinuclease ABC subunit UvrB -
  OCV37_RS05110 luxO 1185348..1186748 (+) 1401 WP_261888124.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV37_RS05115 luxU 1186751..1187110 (+) 360 WP_038181846.1 quorum-sensing phosphorelay protein LuxU -
  OCV37_RS05120 yvcK 1187152..1188075 (-) 924 WP_038181843.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  OCV37_RS05125 moaA 1188381..1189364 (+) 984 WP_038181841.1 GTP 3',8-cyclase MoaA -
  OCV37_RS05130 moaB 1189524..1190030 (+) 507 WP_038182693.1 molybdenum cofactor biosynthesis protein B -
  OCV37_RS05135 moaC 1190049..1190528 (+) 480 WP_038181838.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV37_RS05140 moaD 1190525..1190770 (+) 246 WP_038181835.1 molybdopterin synthase sulfur carrier subunit -
  OCV37_RS05145 moaE 1190779..1191231 (+) 453 WP_038181834.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52580.14 Da        Isoelectric Point: 4.9708

>NTDB_id=89306 OCV37_RS05110 WP_261888124.1 1185348..1186748(+) (luxO) [Vibrio rhizosphaerae strain LMG 23790]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGREALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHEASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEENA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=89306 OCV37_RS05110 WP_261888124.1 1185348..1186748(+) (luxO) [Vibrio rhizosphaerae strain LMG 23790]
ATGCAATCTGAACAGTTACCCCAAAAAAGTAGATATCTGCTGATGGTTGAAGATACAGCATCGGTTGCCGTGTTGTATCG
GACCTACCTTGAACCTCTCGATATTGACATCAACATTGTTGGTACGGGGAGAGAGGCATTAGAGAGTCTTGAAAAAAGAG
AACCTGATCTGATTCTGCTCGATTTACGTCTTCCAGATATGACCGGGATGGATGTTTTGCATGAGGTGAAACGGAAATAC
CCGGATGTTCCTGTCATTTTCATGACTGCTCATGGTTCAATTGATACCGCTGTCGAAGCCATGCGTTATGGTGCTCAGGA
TTTTTTAATTAAACCATGCGAAGCTGACCGATTACGAGTTACGGTCAATAATGCGATTCGTAAAGCTTCGAAGATTAAGA
GTGATTCCGATGACCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCGGTTTATCGAACG
ATCGACTCTGCGGCAGCAAGTAAAGCCAGTATCTTTATTACCGGAGAAAGCGGTACCGGGAAAGAGGTGTGTGCTGAAGC
GATTCATGAAGCGAGTCGGCGAGGTGACAAACCTTTTATTGCTATTAACTGTGCTGCGATCCCGAAAGATCTGATTGAAA
GTGAATTGTTCGGCCATGTCAAAGGCGCTTTTACCGGCGCAGCAACAGACCGGCAGGGTGCTGCTGAGCTTGCCGATGGC
GGGACACTATTTCTGGATGAGCTGTGTGAGATGGATTTGGATTTACAGACAAAATTGTTGCGGTTTATCCAAACTGGCAC
ATTCCAGAAAGTCGGTTCATCGAAAATGAAAAGTGTGGATGTCCGCTTTGTGTGTGCGACCAACCGCGATCCGTGGAAAG
AAGTTCAGGAAGGTCGCTTTCGGGAAGATTTGTACTATCGTTTATATGTGATTCCACTTCACCTACCGCCACTGCGGGAA
CGTGGTGACGATGTCATCGAAATTGCTTACTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGATTTTGTCCGCCT
TGCTGCTGAAGTCGTAGAACGGTTCAGACAGTACGAATGGCCGGGGAATGTCCGCCAGTTGCAGAATGTTTTGCGCAATG
TCGTGGTCTTGAATCAAGGCAAAGAAATCACACTGAGTATGTTACCACCGCCACTGAATCAACCGAAAGAAAGTTATCTG
CGTTTGGTTCAGCCGATGATGGAAGAAAGGAAACCTTCAGTGCATGAAATATTTCCTTTATGGATGACGGAAAAAATGGC
AATCGAAAATGCGATTGATGCCTGTGAAGGAAATATTCCGAAAGCCGCGGGTTATCTCGAGGTGAGTCCTTCGACCATTT
ACCGTAAATTACAATCTTGGAATGCAGAAGAGAACGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.472

95.923

0.839
  pilR Acinetobacter baumannii strain A118

35.897

100

0.361

Multiple sequence alignment