Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   OCV37_RS02610 Genome accession   NZ_AP024903
Coordinates   573210..573830 (-) Length   206 a.a.
NCBI ID   WP_038178184.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 568210..578830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS02600 aceF 569531..571405 (+) 1875 WP_038178186.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV37_RS02605 lpdA 571650..573074 (+) 1425 WP_038178185.1 dihydrolipoyl dehydrogenase -
  OCV37_RS02610 hapR 573210..573830 (-) 621 WP_038178184.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV37_RS02615 hpt 574260..574793 (+) 534 WP_038178183.1 hypoxanthine phosphoribosyltransferase -
  OCV37_RS02620 can 574976..575644 (-) 669 WP_038178182.1 carbonate dehydratase -
  OCV37_RS02625 - 576065..577036 (+) 972 WP_038178181.1 ABC transporter ATP-binding protein -
  OCV37_RS02630 - 577050..577820 (+) 771 WP_038178180.1 ABC transporter permease -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24126.52 Da        Isoelectric Point: 6.2951

>NTDB_id=89304 OCV37_RS02610 WP_038178184.1 573210..573830(-) (hapR) [Vibrio rhizosphaerae strain LMG 23790]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYNLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFTKAVERGDVSEHYDP
EHLVTLFLGIFYSLFVQVNRLQDQKEIDDLVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=89304 OCV37_RS02610 WP_038178184.1 573210..573830(-) (hapR) [Vibrio rhizosphaerae strain LMG 23790]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGCAAACTTCAGCTCATGGAAATAGCGCT
TGAAGTTTTTGCTAAACGAGGTATCGGACGTGGTGGACATGCAGATATCGCTGAGATTGCTCAGGTTTCTGTTGCAACTG
TATTCAACTATTTCCCAACACGGGAAGATTTAGTTGATGATGTGCTCACCCACGTTGTTCACCAATTCTCAAACTTCCTC
GCAGATAATATCGACGTGGATAGTTATATCAAAGATAACCTCTATAACCTGACCCATAAAATGACAAAACTGGTTTTTGA
AGATTGTCATTGGCTGAAAGTGTGGTTCGAATGGAGTGCATCCACTCGTGATGAAGTCTGGCCACTATTTGTCTCGACCA
ACCATACCAACCGCCTGTTGGTGAAAAATATGTTTACCAAAGCAGTTGAGCGTGGCGATGTCAGTGAACATTATGATCCT
GAGCATTTGGTCACTTTGTTCCTCGGCATCTTCTACTCTCTGTTTGTTCAGGTTAACCGTCTACAAGATCAAAAAGAGAT
CGATGACCTGGTGAACAGTTATCTGGACATGTTATGTATTTATAATAACCGTCGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

74.877

98.544

0.738
  hapR Vibrio cholerae strain A1552

74.877

98.544

0.738
  opaR Vibrio parahaemolyticus RIMD 2210633

75.377

96.602

0.728

Multiple sequence alignment