Detailed information NTG0089303

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCV37_RS02530
• Genome accession: NZ_AP024903
• Coordinates: 554400..555272 (-)
• Length: 290 a.a.
• NCBI ID: WP_038178198.1
• Uniprot ID: -
• Organism: Vibrio rhizosphaerae strain LMG 23790
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 549400..560272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV37_RS02490	-	549673..550422 (-)	750	WP_051680279.1	DNA-binding domain-containing protein	-
OCV37_RS02495	-	550406..551326 (-)	921	WP_038178204.1	DUF692 domain-containing protein	-
OCV37_RS02500	-	551342..551617 (-)	276	WP_038178203.1	DUF2282 domain-containing protein	-
OCV37_RS02505	-	551705..551899 (-)	195	WP_261888114.1	zf-HC2 domain-containing protein	-
OCV37_RS02510	-	551896..552522 (-)	627	WP_038178202.1	RNA polymerase factor sigma-70	-
OCV37_RS02515	yacG	552781..552984 (-)	204	WP_038178201.1	DNA gyrase inhibitor YacG	-
OCV37_RS02520	zapD	553018..553758 (-)	741	WP_038178200.1	cell division protein ZapD	-
OCV37_RS02525	coaE	553790..554398 (-)	609	WP_038178199.1	dephospho-CoA kinase	-
OCV37_RS02530	pilD	554400..555272 (-)	873	WP_038178198.1	A24 family peptidase	Machinery gene
OCV37_RS02535	-	555380..556603 (-)	1224	WP_038178197.1	type II secretion system F family protein	-
OCV37_RS02540	-	556584..558347 (-)	1764	WP_051680278.1	GspE/PulE family protein	-
OCV37_RS02545	-	558398..558841 (-)	444	WP_038178196.1	pilin	-
OCV37_RS02555	-	559023..559589 (-)	567	WP_038178195.1	hypothetical protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32178.60 Da
• Isoelectric Point: 8.1486

>NTDB_id=89303 OCV37_RS02530 WP_038178198.1 554400..555272(-) (pilD) [Vibrio rhizosphaerae strain LMG 23790]
MDAFLIYPWLFPVFASLFGLIIGSFLNVVIYRLPQMMVTSWKQEFGEAFPEYKIPSPTKKERISLSLPASFCPHCHHRIR
LWHNIPLFSWLLLGGKCADCGKPISVQYPLVELMTALASCIVAIHGGMTYYTLALLIFTYISIAAACIDLNQMLLPDNLT
IPLIWLGLLLSLTHISPLPLSDAVIGAVAGYVSLWSIYWIFKLLTKKEGMGYGDFKYLAALGAWIGWQTLPLVILLASVI
GILLGGTLLLMKKQGNQAFPFGPSLAIAGWFCLIWGDPMMSWYTSIVLGA

Nucleotide

• Length: 873 bp

>NTDB_id=89303 OCV37_RS02530 WP_038178198.1 554400..555272(-) (pilD) [Vibrio rhizosphaerae strain LMG 23790]
ATGGATGCATTTTTGATTTATCCTTGGTTATTTCCTGTTTTTGCAAGCCTCTTCGGCCTGATCATCGGGAGTTTTCTCAA
TGTCGTCATCTATCGTTTACCACAGATGATGGTCACAAGCTGGAAGCAAGAATTTGGCGAAGCTTTCCCTGAGTACAAGA
TTCCTTCCCCCACAAAGAAGGAACGGATTTCCCTGAGTCTCCCGGCATCATTCTGTCCTCACTGCCATCATCGAATTCGG
CTTTGGCATAATATCCCCTTATTTAGCTGGTTACTGCTCGGTGGCAAATGTGCAGACTGTGGCAAGCCGATATCGGTACA
ATATCCACTGGTCGAGCTGATGACAGCACTGGCAAGCTGCATTGTCGCAATTCACGGTGGCATGACCTATTACACGCTGG
CATTACTCATTTTTACCTACATCAGCATTGCTGCGGCATGTATCGATCTTAATCAGATGTTACTTCCTGACAATTTAACC
ATCCCGCTGATCTGGCTCGGGCTGTTACTATCCCTGACACATATCAGTCCACTGCCTTTATCTGATGCGGTGATCGGCGC
AGTTGCCGGCTATGTGTCACTCTGGTCGATTTACTGGATATTTAAGCTCCTGACGAAAAAAGAAGGCATGGGATACGGTG
ACTTTAAATATCTTGCAGCCTTAGGCGCATGGATCGGCTGGCAAACGTTACCGCTGGTCATTTTACTGGCCTCGGTGATT
GGCATCCTGTTAGGTGGCACACTACTTTTGATGAAGAAGCAAGGTAATCAGGCCTTTCCATTCGGCCCTTCTCTGGCGAT
TGCCGGATGGTTCTGCCTCATCTGGGGAGACCCCATGATGAGCTGGTATACATCCATTGTACTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	58.966	100	0.59
pilD	Vibrio cholerae strain A1552	58.966	100	0.59
pilD	Acinetobacter nosocomialis M2	48.519	93.103	0.452
pilD	Acinetobacter baumannii D1279779	47.778	93.103	0.445
pilD	Neisseria gonorrhoeae MS11	44.043	95.517	0.421