Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU56_RS15880 Genome accession   NZ_AP024901
Coordinates   635394..636485 (-) Length   363 a.a.
NCBI ID   WP_261874913.1    Uniprot ID   -
Organism   Vibrio rarus strain LMG 23674     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 630394..641485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU56_RS15870 - 631886..632839 (-) 954 WP_261874911.1 hypothetical protein -
  OCU56_RS15875 - 632833..635391 (-) 2559 WP_261874912.1 LuxQ periplasmic sensor domain-containing protein -
  OCU56_RS15880 luxP 635394..636485 (-) 1092 WP_261874913.1 substrate-binding domain-containing protein Regulator
  OCU56_RS15885 - 636476..636769 (-) 294 WP_261874914.1 GIY-YIG nuclease family protein -
  OCU56_RS15890 - 636773..637426 (-) 654 WP_261874915.1 YceH family protein -
  OCU56_RS15895 - 637651..637965 (+) 315 WP_261874916.1 DUF496 family protein -
  OCU56_RS15900 - 638077..638592 (-) 516 WP_261874917.1 hypothetical protein -
  OCU56_RS15905 - 638872..639462 (+) 591 WP_261874918.1 pentapeptide repeat-containing protein -
  OCU56_RS15910 - 639466..640413 (-) 948 WP_261874919.1 LysR family transcriptional regulator -
  OCU56_RS15915 - 640544..641443 (-) 900 WP_261874920.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41639.40 Da        Isoelectric Point: 5.5080

>NTDB_id=89296 OCU56_RS15880 WP_261874913.1 635394..636485(-) (luxP) [Vibrio rarus strain LMG 23674]
MRVMLAAALLSFYASECMATTTVLREYWEYESYLNEHPEQKKLTQEMTLRISNPPISANIIQDRPIEIDIVYPGSQLSDY
WWRNIKALELRLKELNIDFRLRKYSSRPNIDHRQEGESLKKALQNEPDYLIFTLDSSRHKKFAESVLSSNKTKLILINIT
TPIKQWDERQPLMYVGFDHVKGSILLAQEYMRNYPEQANFGLMYFSPGYISEARGDTFVKYIKHQGDYAVKTAYFTHANR
ASAYEATLAMLDQQPNIDFIYACSTDVAFGVSDALAELEREDVMVNGWGGGSEIEAIKSGDLDFTIVRMTDETGLAIAEG
IKLDLQGLPVPKVFSGKYQVLTKDDDPQIARDLKLKAFRYSNR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=89296 OCU56_RS15880 WP_261874913.1 635394..636485(-) (luxP) [Vibrio rarus strain LMG 23674]
ATGCGAGTGATGTTAGCTGCTGCGTTATTGTCATTTTATGCGTCCGAATGTATGGCTACCACCACAGTTTTGCGCGAATA
CTGGGAGTATGAATCTTATCTCAACGAGCACCCTGAGCAAAAGAAGTTAACACAGGAGATGACGTTGCGCATCTCCAACC
CGCCTATTAGCGCTAACATCATTCAAGATAGACCTATTGAAATAGATATTGTGTACCCAGGGTCGCAATTGTCTGATTAT
TGGTGGCGCAACATTAAAGCCTTGGAGCTAAGGCTAAAAGAGCTCAATATTGATTTTCGGTTGCGTAAATACTCATCCCG
CCCCAACATTGACCACCGTCAAGAGGGAGAAAGCCTGAAAAAGGCGCTACAAAATGAACCTGATTATCTCATTTTTACCT
TAGACTCTAGTCGGCACAAAAAATTTGCTGAAAGTGTCTTAAGTAGTAATAAAACCAAGTTAATTCTGATTAATATTACC
ACACCCATTAAGCAATGGGATGAACGTCAACCCTTGATGTATGTGGGGTTTGATCATGTAAAAGGGAGTATATTGCTTGC
CCAAGAGTACATGCGCAACTACCCTGAGCAGGCCAATTTTGGGCTAATGTATTTCTCGCCGGGCTACATTAGTGAAGCGC
GCGGTGATACCTTTGTAAAATACATCAAACATCAAGGGGATTATGCGGTGAAAACGGCCTATTTTACCCATGCGAACCGT
GCTTCGGCCTATGAAGCTACCTTAGCGATGCTTGATCAGCAGCCCAATATAGACTTTATTTACGCTTGCTCTACGGATGT
GGCGTTTGGCGTGAGCGATGCGTTGGCGGAGTTAGAACGAGAAGATGTGATGGTGAATGGCTGGGGGGGAGGGTCTGAAA
TAGAAGCCATTAAAAGTGGTGATCTCGACTTTACTATTGTGCGTATGACAGATGAAACCGGTTTGGCCATAGCCGAAGGG
ATTAAGCTGGATTTGCAAGGTCTACCCGTTCCGAAAGTATTCTCGGGCAAGTATCAAGTACTCACTAAAGACGATGATCC
GCAAATTGCACGGGATCTAAAATTAAAAGCCTTTCGATATTCAAATAGGTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(78-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

48.619

99.725

0.485

Multiple sequence alignment